Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05702 ATGAGGAAGCTAAAGCATCATGAGAAAAAGCTTTTGAAGAGGGTGAATTTTTTGGAATGGAAGAGAGAAGGGGGTCACAGAGAGAACATGGTTATGAGAAGATACCATATTACCGGGCGTGATGATTACAAAAAATATTCAAGTATGTGCCGGATGGTTCAGAAGTTAGTAAACACAGTGAAACAGATGGACCCCAAAGATCCTTATCGAGTTGATATGACTGATAAGCTTTTGGAAAAACTTTACAATATGGGTGTGATTCCAACCAGGCAAAGCATCACACTATGTGAACGCTTAACTGTGTCATCCTTCTGCAGACGGAGGCTTGCAACTGTTTTGGTGAAAATGAAATTTGCTGAGCATTTGAAAGAAGCTGTAACGTATATTGAGCAGGGGCATGTTCGAGTTGGTCCAGATACAATTACAGACCCAGCTTTCCTTGTTACTAGAAACATGGAAGACTTCATTACATGGGTGGATTCATCCAAGATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGATTATGATTTAATGAATTAG 549 0.3953 MRKLKHHEKKLLKRVNFLEWKREGGHRENMVMRRYHITGRDDYKKYSSMCRMVQKLVNTVKQMDPKDPYRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLATVLVKMKFAEHLKEAVTYIEQGHVRVGPDTITDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDLMN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05702 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Trre7g05702 182 SUPERFAMILY Alpha-L RNA-binding motif 26 175 - -
Trre7g05702 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 178 IPR022801 GO:0003735|GO:0015935|GO:0019843
Trre7g05702 182 SMART s4_6 107 170 IPR002942 GO:0003723
Trre7g05702 182 FunFam U3 small nucleolar ribonucleoprotein IMP3 107 179 - -
Trre7g05702 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Trre7g05702 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 105 IPR001912 GO:0019843
Trre7g05702 182 Gene3D - 107 182 IPR036986 GO:0003723
Trre7g05702 182 CDD S4 107 175 - -
Trre7g05702 182 Pfam S4 domain 107 153 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05702 Trre-Chr7 62246876 62248994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05702 63 148 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 32.184 3.85e-09 52.0