Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g05694 | ATGGGTAAAACCATAAGGTGGTTCAAGAGTTTGTTTGGGATAAAGAAAGACAAAGATAATTCTAATTCTAATTCAAATTCTTCAACCAAAAAATTGAATCCTCCTTCTTTTGAGGCTTTCTCAAAGAGAGATTCAAGAGGTTTGTGTCATAATCCAGCTACTATACCACCCAACATTTCACCTGCAGAAGCTGCTTGGGTTCAATCCTTCTATACAGATTCCGAAAAGGAGCAAAACAAGCATGCCATTGCGGTCGCAGCTGCCACGGCAGCAGCTGCAGATGCTGCCGTGGCAGCTGCTCAAGCTGCCGTGGCTGTGGTTAGACTAACCAGCCACGGCAGAGACACTATGTTTGGTGGTGCACACCAGAAATATGCAGCTGTCAAGATTCAAACCACATTTAGGGGTTTCTTGGCAAGAAAAGCATTGAGAGCATTAAAGGGATTGGTAAAGTTACAAGCACTAGTGAGAGGGTACTTAGTGAGGAAGCAAGCAACAGCAACACTACACAGTATGCAAGCACTGATTAGGGCACAAGCAACAGTAAGGTCTCATAAATCCCGTGGACTCATCATAAACACAACAAAGAATGAAACACATAACAACAGATTTCAATCACAAGCAAGAAGATCCACGGAAAGGTACAATCAGAATGACAATAATAGGAATGAGTACACAGGTTCAATTCCAATTCACAGTAGAAGATTATCATCTTCTTTTGATGCTACTGTGAATAACAGTTATGATATTGGAAGTCCAAAAATAGTAGAAGTTGATACTGGTAGACCAAAATCAAGGTCTAGAAGGAGTAACACATCAATTTCCGATTTTGGCGAGGACCCGTCATTTCAAACACTTTCATCTCCACTACCAATTACACCTTCTCAGTTATTCATTCCAAATCAAAGAAATTTCAATGAAACAGAATGGGGAATAACAGGGGAAGAATGCAGATTTTCGACCGCGCAGAGCACTCCGCGGTTTGCTAGTTCTTGTAGTTGTGGATTTGTTGCACCTTCCACACCTAAAACAATTTGTGGAGATAGTTTTTATGTTGGTGAGTATGGTAATTATCCTAATTACATGGCTAATACACAGTCTTTTAAGGCGAAATTGAGGTCTCATAGTGCTCCTAAACAACGACCTGAACCCGGTCCGAAGAAGAGGCTTTCATTGAATGAATTGATGGAATCTAGAAATAGTTTAAGTGAAACAACTTCTCCAACCAGAGGAGGTGGTGATTGGTAA | 1248 | 0.4087 | MGKTIRWFKSLFGIKKDKDNSNSNSNSSTKKLNPPSFEAFSKRDSRGLCHNPATIPPNISPAEAAWVQSFYTDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRDTMFGGAHQKYAAVKIQTTFRGFLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSHKSRGLIINTTKNETHNNRFQSQARRSTERYNQNDNNRNEYTGSIPIHSRRLSSSFDATVNNSYDIGSPKIVEVDTGRPKSRSRRSNTSISDFGEDPSFQTLSSPLPITPSQLFIPNQRNFNETEWGITGEECRFSTAQSTPRFASSCSCGFVAPSTPKTICGDSFYVGEYGNYPNYMANTQSFKAKLRSHSAPKQRPEPGPKKRLSLNELMESRNSLSETTSPTRGGGDW | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g05694 | 415 | Gene3D | - | 121 | 174 | - | - | |
| Trre7g05694 | 415 | MobiDBLite | consensus disorder prediction | 253 | 286 | - | - | |
| Trre7g05694 | 415 | Pfam | Protein of unknown function (DUF4005) | 326 | 405 | IPR025064 | - | |
| Trre7g05694 | 415 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 393 | - | - | |
| Trre7g05694 | 415 | MobiDBLite | consensus disorder prediction | 373 | 415 | - | - | |
| Trre7g05694 | 415 | SMART | iq_5 | 145 | 166 | IPR000048 | GO:0005515 | |
| Trre7g05694 | 415 | SMART | iq_5 | 122 | 144 | IPR000048 | GO:0005515 | |
| Trre7g05694 | 415 | ProSiteProfiles | IQ motif profile. | 123 | 151 | IPR000048 | GO:0005515 | |
| Trre7g05694 | 415 | ProSiteProfiles | IQ motif profile. | 147 | 174 | IPR000048 | GO:0005515 | |
| Trre7g05694 | 415 | MobiDBLite | consensus disorder prediction | 17 | 35 | - | - | |
| Trre7g05694 | 415 | Pfam | IQ calmodulin-binding motif | 126 | 144 | IPR000048 | GO:0005515 | |
| Trre7g05694 | 415 | Pfam | IQ calmodulin-binding motif | 150 | 164 | IPR000048 | GO:0005515 | |
| Trre7g05694 | 415 | MobiDBLite | consensus disorder prediction | 376 | 394 | - | - | |
| Trre7g05694 | 415 | MobiDBLite | consensus disorder prediction | 395 | 415 | - | - | |
| Trre7g05694 | 415 | MobiDBLite | consensus disorder prediction | 15 | 43 | - | - | |
| Trre7g05694 | 415 | MobiDBLite | consensus disorder prediction | 196 | 230 | - | - | |
| Trre7g05694 | 415 | MobiDBLite | consensus disorder prediction | 267 | 286 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g05694 | Trre-Chr7 | 62196359 | 62198248 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g05694 | 1 | 403 | IQD Protein Family | AT3G16490 | 48.786 | 7.63e-91 | 278 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g05694 | - | - | mtr:11413683 | 654.055 |