Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05693 ATGACCAAAGTACAAGAATCAGAACAACAATTCATGAAATGGGTCAAATTTGTTGGTGGTCTCAAACACACTGTCTTTAGAACAGCTAAAAATAAGCTTTTTCCTTCTTACACTTTGAATGTTTATAATAAAAAATCTGGTAAAGGAGGATTTTCATCAATTCAAGCTGCCATTGATTCTCTTCCCTTCATCAATCTTGTTAGAGTTGTCATTAAAGTTCATGCAGGAGTTTATACAGAGAAAGTTAGCATTCCAGCATTTAAATCATTCATAACAATAGAAGGAGCAGGTGCAGATAAAACAATTGTTCAATGGGGTGACACTGCTCAAACACCTAATCCAAGTGCAAAAGGACAGACACTAGGAACCTATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAGAACATTACATTCAAAAACACTGCTCCAATTCCAGCACCAGGAGCAGTTGGGAAACAAGGAGTGGCATTGAGAATTTCAGCAGATAATGCAATGTTTCTTGGTTGCAAATTCTTAGGAGCACAGGACACATTATATGATCATATTGGTAGACACTATTACAAAGATTGTTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGCTCTTTCTCTTTTTGAGGGTTGTCACGTGCATGCAATAGCACAAAATACAGGAGCACTAACAGCACAAGGAAGGAGCAGTTTATTAGAAGACACGGGATTCTCGTTTGTACACTGCAAGGTCACGGGATCAGGAGCACTATACCTTGGAAGGGCTTGGGGTCCCTTTTCTAGAGTTGTCTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGATGGTATAATTGGGGTGATCCCAACCGTGAAATGACTGTATTCTATGGACAATACAAATGCACTGGAGCAGGAGCAAGCTATGCAGGGAGGGTATCATGGTCAAGGGAACTCACTGATGAGGAAGCTAAACCATTTATTTCACTTAGCTATATTGATGGGTCTGAATGGATTAATTCTTACTTTTGA 1029 0.3868 MTKVQESEQQFMKWVKFVGGLKHTVFRTAKNKLFPSYTLNVYNKKSGKGGFSSIQAAIDSLPFINLVRVVIKVHAGVYTEKVSIPAFKSFITIEGAGADKTIVQWGDTAQTPNPSAKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVALRISADNAMFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINSYF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05693 342 FunFam Pectinesterase 35 340 - -
Trre7g05693 342 Pfam Pectinesterase 44 334 IPR000070 GO:0030599|GO:0042545
Trre7g05693 342 ProSitePatterns Pectinesterase signature 2. 197 206 IPR033131 -
Trre7g05693 342 Gene3D - 36 341 IPR012334 -
Trre7g05693 342 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 339 - -
Trre7g05693 342 SUPERFAMILY Pectin lyase-like 38 340 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05693 Trre-Chr7 62189882 62192801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05693 46 338 Carbohydrate Esterase AT5G47500 50.000 2.09e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05693 K01051 - gmx:100802832 628.632