Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05685 ATGCAAAAAACCATGATTCTGTCTTATCTCCACATCCTTCTTCTCCTTCTTCCAAATGCAGCAAAAGCTTCCATTGGTATAGGCATTGGTGTTGGTGTTGGCATTGGCATTGGCAATGGTGGTGCTGGTGCTAACACTAACACTCCATTGCCTTCAGGATCAAACCTAAACAATGCTTACACAGCTCTTCAAGCTTGGAAATCTTCAATCACTGATGACCCTTTGAAGATTCTAGAAACATGGATTGGTCCTAATGTTTGTTCTTATAGAGGAATCTTTTGTGACACTAGTAATACTCCTTTTGTTGCAGGAATAGATCTCAACCATGCAAATCTCCAAGGAACACTTGTAAAAGAACTCTCTTTACTATCTGATATAACACTTCTTCACCTCAACAGTAACAAATTTTCTGGTACAGTTCCTGATACATTCAAAGATTTCACCTTTCTTCAAGAACTAGACCTAAGCAATAACCAACTTTCAGGTCCTTTCCCTACAGTTACTTTAGACATGCCAAGTTTAATTTACTTGGATCTTAGATTCAATAACTTTAAAGGGTCACTTCCTGAAGAACTTTTCAATAAGAAACTAGATGCAATATTTCTCAACAACAATCAATTTAGTGGTGAAATACCTCAAAGTTTTGGTAACTCACCTGCATCAGTGATCAATTTAGCTAACAACAAATTAAGTGGAAACATACCTGCAAGTTTTGGTTTTATGAGTACTAAGCTAAAAGAGATTCTTTTTCTTAATAATCAGTTAACAGGTTGTATTCCTCAAGGTGTTGGTATATTCACAGAAATGCAGGTTCTTGATGTGAGTTTTAATTCACTTGTGGGCCATTTGCCAGATACAATATCTTGTTTGCAAGATATTGAGGTTCTTAATTTAGGACATAACAAGCTTTCTGGTGATATATCTGATGTGATATGTTCTTTGAGAAGCTTGTTGAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAAGAATGTTCAAGGCTTTTCAATATTGGTTTTGATTTTACAGATAATTGTATTCCTGGTAGGAATATGCAGAGACCTTCACCTGAGTGTTCTGTGATCCCTGATGGTAATTTGAATTGTCTTAGAATTCCTACTCCAAAACCTCTTGTTTGTGGTACCTTGGCTTCAAGAGCTTCTAATTCTAAGTACACAAATATTCATTCATCATCTCCCTGA 1209 0.3581 MQKTMILSYLHILLLLLPNAAKASIGIGIGVGVGIGIGNGGAGANTNTPLPSGSNLNNAYTALQAWKSSITDDPLKILETWIGPNVCSYRGIFCDTSNTPFVAGIDLNHANLQGTLVKELSLLSDITLLHLNSNKFSGTVPDTFKDFTFLQELDLSNNQLSGPFPTVTLDMPSLIYLDLRFNNFKGSLPEELFNKKLDAIFLNNNQFSGEIPQSFGNSPASVINLANNKLSGNIPASFGFMSTKLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLVGHLPDTISCLQDIEVLNLGHNKLSGDISDVICSLRSLLNLTVAYNFFSGFSQECSRLFNIGFDFTDNCIPGRNMQRPSPECSVIPDGNLNCLRIPTPKPLVCGTLASRASNSKYTNIHSSSP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05685 402 Pfam Leucine rich repeat 127 184 IPR001611 GO:0005515
Trre7g05685 402 Pfam Leucine rich repeat N-terminal domain 57 95 IPR013210 -
Trre7g05685 402 Gene3D Ribonuclease Inhibitor 220 339 IPR032675 -
Trre7g05685 402 FunFam Leucine-rich repeat extensin-like protein 1 60 217 - -
Trre7g05685 402 SUPERFAMILY L domain-like 58 339 - -
Trre7g05685 402 Gene3D Ribonuclease Inhibitor 57 219 IPR032675 -
Trre7g05685 402 PRINTS Leucine-rich repeat signature 150 163 - -
Trre7g05685 402 PRINTS Leucine-rich repeat signature 290 303 - -
Trre7g05685 402 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 54 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05685 Trre-Chr7 62141013 62142221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05685 56 364 Leucine-rich Repeat extension Gene Families AT3G24480 52.396 4.36e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05685 - - gmx:100820611 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05685 7 62141013 62142221 Trre7g05685 7 62141013 62142221 ECH