Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05683 ATGAAGATCGAGGAATTGGAGGATGCAGAGTGTAGTAGAGATGAAGAAGAGAATTCCGAGAGGCAAATTGTTATGGTTGATGCAAAGAGAGCGTTGGTTGGTGCAGGTGCACGGATCCTATTTTATCCAACACTTTTGTATAACGTGGTTCGTAATAAAATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGATGAGTTTTTGTTGCTGGGCGCAGTCCCGTTCCCTAAAGATGTTCCTCAATTGAAGAACCTTGGTGTTGGCGGTGTGATTACTTTGAATGAACCTTATGAAACTTTGGTACCATCTTCATTATATCGTGCTCACGGGATTGATCATTTGGTAATTCCCACAAGGGATTATCTCTTTGCTCCCTCATTTGTGGATATCAACCGGGCAGTGCAGTTCATTCATTATAATGCAACTTGTGGTAAAACAACTTATGTTCACTGTAAAGCTGGGAGGGGGAGGAGTACAACAATTGTGCTTTGTTATTTGGTTGAATACAAGCACATGACACCTGCTGCTGCCCTGGATTATGTGCGGTCTCGAAGACCTAGAGTGCTACTGGCACCATCACAGTGGAAGCAAATATCTGTTCAAAACTATAACAAGCAAAGGCCGTGTTCTTTACCTTACTCTCCCTCTGGGGACACGGTTCTCATAACCAAAGATGATCTTGAAGGCTATCATAGCACATCTGATACTAGTATGGAGCTGGCTATTGTTCCTAAAGTGGCAAAGACTAAACCCATGATAGCAAGACTATCTTGCCTGTTCGCATCCTTAAAAGTAGCCGGTAGTAGTGTACCAATGACAAGGCGGCTGCCAGTTTCAGAGTCACGTGCTTGCTAA 855 0.4351 MKIEELEDAECSRDEEENSERQIVMVDAKRALVGAGARILFYPTLLYNVVRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPQLKNLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDINRAVQFIHYNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALDYVRSRRPRVLLAPSQWKQISVQNYNKQRPCSLPYSPSGDTVLITKDDLEGYHSTSDTSMELAIVPKVAKTKPMIARLSCLFASLKVAGSSVPMTRRLPVSESRAC 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05683 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 198 IPR029021 -
Trre7g05683 284 FunFam Dual specificity phosphatase domain protein 60 208 - -
Trre7g05683 284 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 262 - -
Trre7g05683 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Trre7g05683 284 SMART dsp_5 63 206 IPR020422 GO:0006470|GO:0008138
Trre7g05683 284 CDD PTPMT1 60 196 IPR044596 GO:0004721
Trre7g05683 284 Pfam Dual specificity phosphatase, catalytic domain 80 199 IPR000340 GO:0008138|GO:0016311
Trre7g05683 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Trre7g05683 284 Gene3D Protein tyrosine phosphatase superfamily 60 207 IPR029021 -
Trre7g05683 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05683 Trre-Chr7 62132017 62133833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05683 19 272 Protein tyrosine phosphatase (PTP) family AT2G35680 53.199 1.77e-100 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05683 - - gmx:100817410 520.776