Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05682 ATGATGAATAATAAGATGAGCAACGTTAGTAGCTCTGATCTCATAGATTCTAAGCTTGAAGAGCATCAATTGTGTGGATCCAAACACTGTCCTCGCTGCGGACACAAGTTTGATCAAGGAAAACCGGATTGGCTAGGTCTACCAGCAGGAGTGAAATTTGATCCAACAGATCAAGAACTCATTGAACATCTTGAAGCTAAAGTTGAGTCAAAGAACATGAAATCACACCCTTTGATAGATGAATTCATTCTCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAAAAACTTCCAGGAGTGACAAGAGATGGATTAAGTAGACACTTTTTCCATAGACCATCAAAGGCATATACAACAGGAACAAGAAAGAGGAGAAAGATTCAAACAGAAGAATGTGACTTACAAGGAACATCATCAGGTGGAGAAACAAGATGGCATAAAACTGGTAAGACAAGACCTGTTATGGTTAATGGAAAACAAAAAGGTTGTAAGAAAATTCTTGTCCTCTACACTAATTTCGGGAAGAATCGAAAACCGGAGAAGACGAATTGGGTGATGCATCAGTATCATTTAGGACAACATGAAGAAGAGAAAGAAGGAGAACTTGTTGTTTCAAAGATATTTTATCAGACACAACCAAGACAGTGTAATTGGTCTGAAAATAATAATAATAATCATAGAATTGGTGCAACAACAATAACTGGTGAAGGAAGTGGTGGAGGAGAACCTAGTAATAATAATTATGGAAGAAGAGATAGTGGAAGTGGAAGTTCTTCTTCTAAGGAAATTGTTACTCAAAGTCATGGTCACATTCATAGAGATGAAATGTCTGCTGTTGTTGGTGTAAATCCTTTAACAAGCTTCACAAATGCCTTGGATATTCAACACCTTAAATCCGATCATTTCGGCTTCCTCCCATTTCGAAAAAGCAGTTTTGATGAGGTTGGAATAGGAGAGGGTTCTACAGCAAGAGAAATGCAAGCATCAGGAGGGTCATGTGATCAAGAAATACATGAAAGGCAGCAGCATGTAGTAGTACAACATCATCAACATCATCAGAATCAGCATCAACATCAACATCAACATCAACAACATGAGATTCATGCACACCAACAGATTAATGCAAACACAGCTTTCCATATAAGTAGGCCTTCAAATCCAATCTCAACTATTATATCTCCACCTCCACTTCACCACACATCCATCATCCTTGATGATAATGCCTACCATGTCTCAGCAATCATGCTACAACAAAATGAAAATTTTCAGCAACACCAACAACAACAACATCATAAACTAGGTGGTGGTGGAAGGTCTGCGTCTGGTTTAGAGGAAGTCATTATGGGGTGCACTTCAACATCGTCTGATTCTATCAAAGAGGAGTCATCTATTAGAAACCAACAAGAAGCTGAGTGGTTGAAATACTCTTCATATTGGCCAGTTGACCCTCATGACAACCCCAACCATCATCATGGGTAG 1488 0.3878 MMNNKMSNVSSSDLIDSKLEEHQLCGSKHCPRCGHKFDQGKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEECDLQGTSSGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSENNNNNHRIGATTITGEGSGGGEPSNNNYGRRDSGSGSSSSKEIVTQSHGHIHRDEMSAVVGVNPLTSFTNALDIQHLKSDHFGFLPFRKSSFDEVGIGEGSTAREMQASGGSCDQEIHERQQHVVVQHHQHHQNQHQHQHQHQQHEIHAHQQINANTAFHISRPSNPISTIISPPPLHHTSIILDDNAYHVSAIMLQQNENFQQHQQQQHHKLGGGGRSASGLEEVIMGCTSTSSDSIKEESSIRNQQEAEWLKYSSYWPVDPHDNPNHHHG 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05682 495 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 369 IPR044799 GO:0003700
Trre7g05682 495 MobiDBLite consensus disorder prediction 221 275 - -
Trre7g05682 495 MobiDBLite consensus disorder prediction 425 444 - -
Trre7g05682 495 Pfam No apical meristem (NAM) protein 48 194 IPR003441 GO:0003677|GO:0006355
Trre7g05682 495 SUPERFAMILY NAC domain 43 213 IPR036093 GO:0003677|GO:0006355
Trre7g05682 495 ProSiteProfiles NAC domain profile. 47 213 IPR003441 GO:0003677|GO:0006355
Trre7g05682 495 MobiDBLite consensus disorder prediction 221 268 - -
Trre7g05682 495 Gene3D NAC domain 56 217 IPR036093 GO:0003677|GO:0006355
Trre7g05682 495 FunFam NAC domain-containing protein 73 56 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05682 Trre-Chr7 62121255 62126691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05682 10 491 NAC Transcription Factor Family AT5G56620 49.489 2.06e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre7g05682 NAM 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05682 - - tpra:123915534 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05682 7 62121255 62126691 Trre7g05682 7 62121255 62126691 ECH