Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05642 ATGGCAGTATCACTATCTCTTCAATTTCCGTTCCTTTCTTCTCCGAACACCAAAACTCACACTCGCCGGAAATTCGCCTGCGTTGCGGCGGCGACGGCGAGCAACGAGATTCCTCTCCTTCAAGTCAACGATCTTCGAGCAAAAATCGTAGAATCAAATGTCGAAATTCTCCGAGGCGTTAATCTCACAATTAACAGAGGAGAAATTCACGCTATCATGGGGAAAAACGGTTCTGGAAAAAGCACTTTCGCGAAAGTTCTCGTTGGTCATCCAGATTATGAAGTTACAGGTGGTACTGTTGTTTTCAAAGGGGAAAATTTGCTTGAAATGGAACCTGAAGAAAGAGCACTTGAAGGTCTTTTCATGAGTTTTCAATCACCTGTTGCTATCCCTGGTGTTTCAAATGATCAATTTCTTGTTATGGCTTATAATGCTCGAAGAAAAAAACTTGGTCTTCCTGAACTTGGACCCCTTGAGTGTTTTTCTTATTTAATGGAGAAGCTACAACTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTCAATGAAGGGTTTAGTGGAGGTGAAAGAAAACGCAATGAAATTTTGCAGCTTGCCGTTTTGGGGGCAGATTTGGCTATTTTGGATGAAATTGATTCGGGATTGGATGTTGATGCACTCAGGGATGTGGCAAGTGCAGTTAATAAAATTCTTACCCCGGAGAATTCTCTGTTGATGATTACTCACTATCGCCGAATTCTTGATCTTTTGAAACCTAGCCACGTCCATGTTATGGACAACGGCAAAATTGCAAGGACAGGCGACCTATCCATGGTAGATGCAATTGAGGCAGATGGATATGAACTAGTCTCTGCTTGA 861 0.4216 MAVSLSLQFPFLSSPNTKTHTRRKFACVAAATASNEIPLLQVNDLRAKIVESNVEILRGVNLTINRGEIHAIMGKNGSGKSTFAKVLVGHPDYEVTGGTVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNKILTPENSLLMITHYRRILDLLKPSHVHVMDNGKIARTGDLSMVDAIEADGYELVSA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05642 286 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
Trre7g05642 286 SMART AAA_5 66 263 IPR003593 GO:0016887
Trre7g05642 286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 286 IPR003439 GO:0005524
Trre7g05642 286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 270 IPR027417 -
Trre7g05642 286 Gene3D - 39 285 IPR027417 -
Trre7g05642 286 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 15 284 IPR010230 GO:0005524
Trre7g05642 286 Pfam ABC transporter 57 211 IPR003439 GO:0005524
Trre7g05642 286 CDD ABC_FeS_Assembly 40 281 IPR010230 GO:0005524
Trre7g05642 286 NCBIfam Fe-S cluster assembly ATPase SufC 40 283 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05642 Trre-Chr7 61765358 61768403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05642 53 280 Calmodulin-binding Proteins AT2G36910 23.967 1.21e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05642 K09013 - gmx:100811883 436.802