Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05641 ATGAGAGGAAAGGGAACGATTGTGCCACCGAGTTATTTTCGCGGCGGAAAATTTCTTCCAAGAGAGAAAGTTGATGCTACTTCATCTTCAAGATATGATATGGAAGTTGATGGAAACGGTAAGAGAATTCAAAAACGTAAATGTCTTGAAGAGTTGGTTACAACAGGTCGCATCAGTGTGTTGCTGAATGATGGTCCTGCTCTGGGACGGGAATTTGATTCTCTTCCTTCAGGACCCAAAAATTACACTGCTGCATGTGAACAGGACCAAGAGCCTGTCAAAAGGAGAAAGGCTTCGAAAAATGCAATTCAAAATCATCCTAATTGTAATACGAAAGCACCTGTGAAGAAACATGGTATGGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATACCAGAAACGTTCCAGTTGGTTTTGGGTTTGCTGACCGGGAAGTTCATCTAACCTCTAATTCTAAAACGCCAATGTCAACCAACAGGCCACGGAAAGCAGTAACCACAAATGCAAAACCAAGAAATAAGATGCCAAATAGGAAAACTACATTACAGGAGAAGAGGAAACAGTTCGTGCAAAAAAGAGTGGGTGAATCAAACCAATATGTGACTCAAAACCAGCCTCCCATAGAAAAATGTGAACTTGCTTTAGATAGCTCAATATCTGAGGAGGGCGTTGATCAAATTTCATTGTTAATTGATGATGAAGAGTTAGAGCTGAGAGAGTTACAAGAAGGAACCAATCTGCTTATTTGTCCAGAGCAACTAGCTGCCAGTGGAATGCTTGGTGGCTCACTTTGTCCAGACGTGCTAGTCAAATTCCCCCCAGGTGCCGTCAAGATGAAGAAACCTATACATTTGCAACCTTGGGACTCCTCCCCAGAACTGGTGAAGAAATTGTTTAAGGTGTTCCATTTCATTTATACATATGCTGTAGTTGTTGATGTTTGTCCCTTCACTCTCGATGAGTTTGTTCAGGCATTTCATGATAAGGATTCAATGTTACTTGGAAAGATTCACGTGGCCCTTCTCACACTGCTTCTATCTGACATTGAAGTGGAGCTTTCTAATGGGTTTTGTTCTCATTTAAATAAGTCATGCAACTTTCTTGCGCTGCTTCACTCCGTTGAAAATCAAGAATATTCCCTTGATGTTTGGAGAAGATCTCTAAATCCTCTTACTTGGATTGAAATACTCCGTCAAGTGCTGGTAGCTGCTGGATTCGGTTCCAAGCAAGGTGCCTTACGAAGAGATGGCCTTGGCAAGGAATTGGATATTCTTGTAAACTATGGCCTGTGCCCTGGCACCTTGAAGTGTGAGTTGTTTAAAATCTTGTCAGAACGAGGTAACAATGGGTGCAAAGTTTCTGAGCTGGCAAAGTCAATGCAGATTGCAGAATTGAACCTTACCAGCACAACAGAGGAACTAGAGTCTTCAATATATTCCACACTTTCAAGTGATATTACATTATTTGAAAAGATTTCATCGTCTGCATATCGATTGCGTATGAGCACTGTTTCAAAGGACAATGATGATTGTGAGTCAGATACCGAGGACTCTGGGAGTGTTGATGACGAGCTCAACAACTCTGATACATGTAGCAGTGGAGATGATTTTGAAAGCGCTTCAATAAACTCTAATATAAGAAAATTGAAGCGTGATAACAATCGTAAAGTTAAACATAATAGGCTGAAAGTTTACACTGAAATTGATGAGAGTCGTGCAGGAGAAGTGTGGTTGTTAGGACTGATGGACAGTGAATACTCAGATTTGAAAATTGAAGAAAAATTGGCAGCTTTGGCAGCGTTGACCGGTCTTCTTTCATCTGGATCCAGCATCAGGATGAAGGATCCAGTAAAAGTTACAGCTGATTGTAGTTCTAGTATCCAACCACGTGGTTCTGGAGCAAAAATTAAGAGATCAGTAGTAAAGAATCCTGGTTCATTTTTGTACCCAGTTGAACAAATGCAATGTATTAAAGAGGTGCACATGAATTCTCACCCCGGTCCAGTAGATTCCTCATCGTTAGTCTCAAAATTCCATATGCAGGAGGCATCCTTTGAGAAAAGGAAAGGTTCAGATGATTCACACCCCATACAATCAGTATTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTCTTCTTAGGCCCGTGTAATGTAGATGATCCTGGCCACCGGAGGGTTTACTTTGAATCCTCTGAAGATGGCCACTGGGAGGTGATTGATACAGAAGAGGCATTGTGTGCATTGTTGTCAGTTCTGGATGATAGAGGGAAACGTGAGGCTCTTCTTATTGAATCTTTGGAGAGACGACAAACGTCTCTATGCAGATATATGTCCAGGATTAAGGTTAACAATGTTGGAATGAGGTGTATGTCACATTCTGATCAGTCTGAGCTGGATAGGGTTACAGAAGATAGCTGTTCTCCAGTATCTGATGTAGACAACCTGAATCTGGCTGAGTCTTCTAGAGAATCTTTGCCGTCACCTGGGGCTGTGGTAATTGAAGCTGGGAAGAAAGCAGAGGAACAACTGCAAAAATGGATCCGTGTTCAGAAATATGATTCTTGGATTTGGAATTCATTTTATTTAGATCTCAATGTTGTAAAATATGGCAGAAGGTCTTATCTCGACTCTCTCGCCAGATGTGGGAGTTGCCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAACTTGATTTTGACCTTGAAGAAAAATATGCGGTCCACATAGCCATGTGCAGGGAGAAAGAAGACAACAATACATTTCCGAATCATAAAGTCTTGTCATCACATATTCAATCATTGAAAGCTGCAATTTATGCAATTGAGTCTGTTATGCCCGAAGATGCCCTGGTTGGTGCTTGGAGGAAGTCTGCCCATAATCTATGGATCAAAAGGCTTAGACGCACCTCGACTTTAGTGGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCAATCAATGAGTGCTGGTTATTTCAGTGCAAATTTCCAGACGGCGTGGTTGAAGAAACGATTGCATCTTTTGCATCAATGCCCCATACTTCATCTGCTCTTGCTCTGTGGTTGGTGAAGTTAGATGCCATAATTGCTCCTTACCTCGATAGAGTCCAAACTCAGAAGAAACAGGGAAATGGTAAGCATGGTTCTTGGTGA 3189 0.4161 MRGKGTIVPPSYFRGGKFLPREKVDATSSSRYDMEVDGNGKRIQKRKCLEELVTTGRISVLLNDGPALGREFDSLPSGPKNYTAACEQDQEPVKRRKASKNAIQNHPNCNTKAPVKKHGMGKGLMTVWRATNPDTRNVPVGFGFADREVHLTSNSKTPMSTNRPRKAVTTNAKPRNKMPNRKTTLQEKRKQFVQKRVGESNQYVTQNQPPIEKCELALDSSISEEGVDQISLLIDDEELELRELQEGTNLLICPEQLAASGMLGGSLCPDVLVKFPPGAVKMKKPIHLQPWDSSPELVKKLFKVFHFIYTYAVVVDVCPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELSNGFCSHLNKSCNFLALLHSVENQEYSLDVWRRSLNPLTWIEILRQVLVAAGFGSKQGALRRDGLGKELDILVNYGLCPGTLKCELFKILSERGNNGCKVSELAKSMQIAELNLTSTTEELESSIYSTLSSDITLFEKISSSAYRLRMSTVSKDNDDCESDTEDSGSVDDELNNSDTCSSGDDFESASINSNIRKLKRDNNRKVKHNRLKVYTEIDESRAGEVWLLGLMDSEYSDLKIEEKLAALAALTGLLSSGSSIRMKDPVKVTADCSSSIQPRGSGAKIKRSVVKNPGSFLYPVEQMQCIKEVHMNSHPGPVDSSSLVSKFHMQEASFEKRKGSDDSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRYMSRIKVNNVGMRCMSHSDQSELDRVTEDSCSPVSDVDNLNLAESSRESLPSPGAVVIEAGKKAEEQLQKWIRVQKYDSWIWNSFYLDLNVVKYGRRSYLDSLARCGSCHDLYWRDERHCKICHMTFELDFDLEEKYAVHIAMCREKEDNNTFPNHKVLSSHIQSLKAAIYAIESVMPEDALVGAWRKSAHNLWIKRLRRTSTLVELLQVLADFVGAINECWLFQCKFPDGVVEETIASFASMPHTSSALALWLVKLDAIIAPYLDRVQTQKKQGNGKHGSW 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05641 1062 Pfam DDT domain 296 351 IPR018501 -
Trre7g05641 1062 ProSiteProfiles DDT domain profile. 295 354 IPR018501 -
Trre7g05641 1062 SMART testlast3 295 354 IPR018501 -
Trre7g05641 1062 MobiDBLite consensus disorder prediction 153 193 - -
Trre7g05641 1062 MobiDBLite consensus disorder prediction 99 118 - -
Trre7g05641 1062 MobiDBLite consensus disorder prediction 509 539 - -
Trre7g05641 1062 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 701 774 IPR028941 -
Trre7g05641 1062 MobiDBLite consensus disorder prediction 153 179 - -
Trre7g05641 1062 Coils Coil 227 247 - -
Trre7g05641 1062 PANTHER HOMEOBOX PROTEIN SIX 186 1051 - -
Trre7g05641 1062 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 576 615 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05641 Trre-Chr7 61755141 61762601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05641 215 616 Homeobox Transcription Factor Family AT5G44180 31.102 4.40e-47 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre7g05641 WSD 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05641 - - mtr:112417546 1661.35