Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05639 ATGACCAAGCCAGAAGACGCCGCCGTCGCCACCGCAGCTCCGGAAGTTGGTGGTGGAGAGAAGGACGGCATAAACAGTGAGCTATGGCAAGCTTGTGCTGGTCCTCTTGTCAATCTTCCTTTAGCTGGAACTCATGTTGTTTACTTTCCTCAAGGCCACAGCGAACAAGTTGCAGCATCTTTGAAGAAAGATGGGGATGTCCAAGTACCAAACTATTCCAATCTTCCGTCCAAGTTACCGTGTATTCTTCACAGTCTCACGTTGCATGCAGATCCAGATACAGATGAAGTATATGCCCAGATGACACTTCAACCGGTGCCTTCTTTTGACATGGATGCCTTGTTAAGATCAGATATTTCTCTCAAGTCCAGCAAGACACAACCCGAGTTTTTCTGTAAACAACTGACAGCAAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCCGCAGAGAAGATTTTCCCCCCTCTTGATTTCTCTGCGCAACCTCCTGCTCAAGAACTTGTCGCAAAGGATTTGCATGGTAATGTTTGGAAGTTCCGCCATATATATCGTGGACAACCGAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTATCAGTGGAAAGAAGCTTTTAGCTGGAGACTCAGTTTTATTTATACGAGATGAAAAACAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGGCAACCGACCAATCTATCATCCTCAGTACTATCAAGCGATAGTATGCACATTGGAATTCTGGCTGCTGCAGCTCATGCTTCTGCAAACAATAGTCCCTTCACCGTGTTTTATAATCCTAGGGCCAGTCCCTCAGAGTTCGTTATTCCATTGGCCAAGTACTACAGGGCAGTATACAGCCACCAAATATCGCCTGGGATGCGCTTTCGAATGATGTTTGAAACAGAAGACTCGGGAACAAGAAGATATATGGGTACAGTTACAGGTGTCAGTGATCTGGATCCCGCGAGTTGGAAAAACTCTCAGTGGCGTAATTTGCAGGTTGGTTGGGATGAATCCACTGCCGGGGAAAGGCGAAGTAGGGTCTCAATATGGGAAATCGAACCTGTTACTGCTCCATTTTTCATCTGTCCTCCTCCATTCATCAGATCCAAGAGACCAAGACTACCCGGAATACCTGATGATGAGCTATTTAATGTCAGTAACCTTTTCAAAAGTACAATGCCGTGGCTTGGTGATGATATGAGTATGAAGGATCCTCAGGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGAACATACAGCAAAATCCCACGTTGGCTAGCTCATTGCAACAAAATCATGTGCCTTCCATGTCTGGATCCGTTTTACACAATCTTCCTGGAGCTGATATTGCCCATCAATTGGGATTCTCTACTCAACAAATCTCTCAATCAAACAACGTAGCTTTCAATGCTCCAGGGATACTTCAGACTCCCCAACAACTTGATCACCTTCAGAAGCTATCATCCACATCTAGCGGATTTGGAACAGTCATGCAGCCAGAGCAACAACATTCTAGACAGAACTTGGTAAACCAAACTTTACCACAGAGTCAAGTTCAGACTCATGTTCTTAATCCACAGGGTCTCGTCCAAACGAACAATATAGTTCAATCACAACAACAATCTGCTCAAAACCATCAACTCCAGAGAAGTCTCTCTCAGAACCCACTACATCAGCAGCTTCAACAGACTATAATTGGTCAGAACCAACAGCAAAATATGATCAGATCCGCTATACCAGATCATATTAATCAACAGATACCTATGTCGGATAATCAAATTCGGATTCAGTTGTTACAGAAGCTTCAACAGCAACAACAAACATTCTTTGCTCAGCAATCTGCATTGCAGCAGCCTGCTCAACTTATTCAAAACCAAGAGCAGCAGAGGCAACTTTTAGATGCAACACACAACTCTAGGGCATTAACTCCCAACCAAGTGTTTGAAATTCCTCCTACACTTCAAAACTCACTGCCTGGGACTAATTCCATGATCCATCAGATGACAGATCATAGTAGCCAGAACAATGTTCAGTTCTCTCATCCATCCAAGCAACCAAAGCTTCAACACCAACCACAACAAATGCAACCTGACTCGGTTTCTAAAATGTCTAGTCATGTTGCACCTCCTATTGCAACTACAACTAACCATTTATCTGCTTCTGGTTGCAGTACACGGACTGTAGCAGCTGGAACGGGGCCATCAGTAATTATTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTGCTAATGTGCTTCCTCCAATGACGACATCCCACGGCCTTATGAGCACAATAGGGGATGACGCGGCTCAGTCTTCTGCGACGATCTTGAGCCAAAGTGCCTTAGAGACCATGTCATCTAGTGCAAATGTGGTAAAATATGTACCGCCAAAATATGAAGCTAAGCCTTCTTTAAATCACAATCAAGGGAATTTTTACCCTCAGACTTGCTTGAACGGTGGTGCTGTCCAGACAGATTGTTTGGATACATCGTCTTCTACAACTTCGGTTGGCCTTTCCCAGAATGATACACGCTTTCATCAGAATGACAACCTGTTATCTTACAATCCACAATCGATGTTTTGTAGAGACAACATTCAAAATGTGGAAGTTCAGGCTGATGCTAGGTGCAATATTGCATATGGCAACAGCATGAATGAGCAACTGAGAATGCCACCGAATCTAGATTCTACCGTAGCCAAAGGCACAACAAGGTCGGGCAAGGATTTTTCAAATAATGTCTCTTCCTCAGGCTTGCTTGGTGACTATGAAAATAACAATGATGCTCAGCCTGAACTTTCATCTTCAATGGTTTCACAAACATTTGGAGTCCCTGATATGACCTTTAATTCTATTGATTCCACCATAAATGATAGTAGTTTCTTGAATAGTGGTCCATGGGCTCCACCGCCGCTGCCACATCAATTTCAACGGATTAGAACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGATCCATAGACATAACAAGATATTCAGGTTACGAGGAACTTAAACATGATCTGGCTCGTCGGTTTGGTATTGAGGGACAGCTGGAGGATCGACAAAGGATAGGTTGGAAACTTGTTTATGTAGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAATTTGTTAACTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACAAATGAGCATAGATGGAGATTTTGGCAATGGTGGCCTTCCAAAACAGGCTTGTAGCAGCTCTGATGGTGGGAATACTTAA 3318 0.4379 MTKPEDAAVATAAPEVGGGEKDGINSELWQACAGPLVNLPLAGTHVVYFPQGHSEQVAASLKKDGDVQVPNYSNLPSKLPCILHSLTLHADPDTDEVYAQMTLQPVPSFDMDALLRSDISLKSSKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKKLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMMFETEDSGTRRYMGTVTGVSDLDPASWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFIRSKRPRLPGIPDDELFNVSNLFKSTMPWLGDDMSMKDPQAFPGMSLAQWMNIQQNPTLASSLQQNHVPSMSGSVLHNLPGADIAHQLGFSTQQISQSNNVAFNAPGILQTPQQLDHLQKLSSTSSGFGTVMQPEQQHSRQNLVNQTLPQSQVQTHVLNPQGLVQTNNIVQSQQQSAQNHQLQRSLSQNPLHQQLQQTIIGQNQQQNMIRSAIPDHINQQIPMSDNQIRIQLLQKLQQQQQTFFAQQSALQQPAQLIQNQEQQRQLLDATHNSRALTPNQVFEIPPTLQNSLPGTNSMIHQMTDHSSQNNVQFSHPSKQPKLQHQPQQMQPDSVSKMSSHVAPPIATTTNHLSASGCSTRTVAAGTGPSVIIDDVPSCSTSPSTNNCANVLPPMTTSHGLMSTIGDDAAQSSATILSQSALETMSSSANVVKYVPPKYEAKPSLNHNQGNFYPQTCLNGGAVQTDCLDTSSSTTSVGLSQNDTRFHQNDNLLSYNPQSMFCRDNIQNVEVQADARCNIAYGNSMNEQLRMPPNLDSTVAKGTTRSGKDFSNNVSSSGLLGDYENNNDAQPELSSSMVSQTFGVPDMTFNSIDSTINDSSFLNSGPWAPPPLPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYEELKHDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSIDGDFGNGGLPKQACSSSDGGNT 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05639 1105 FunFam Auxin response factor 295 366 - -
Trre7g05639 1105 SMART B3_2 131 233 IPR003340 GO:0003677
Trre7g05639 1105 MobiDBLite consensus disorder prediction 915 944 - -
Trre7g05639 1105 Pfam AUX/IAA family 994 1078 IPR033389 -
Trre7g05639 1105 Gene3D - 988 1082 - -
Trre7g05639 1105 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 608 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre7g05639 1105 SUPERFAMILY DNA-binding pseudobarrel domain 121 260 IPR015300 -
Trre7g05639 1105 CDD B3_DNA 130 222 IPR003340 GO:0003677
Trre7g05639 1105 FunFam Auxin response factor 129 233 - -
Trre7g05639 1105 SUPERFAMILY CAD & PB1 domains 1006 1071 - -
Trre7g05639 1105 ProSiteProfiles PB1 domain profile. 993 1077 IPR000270 GO:0005515
Trre7g05639 1105 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Trre7g05639 1105 MobiDBLite consensus disorder prediction 1 21 - -
Trre7g05639 1105 FunFam Auxin response factor 988 1082 - -
Trre7g05639 1105 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre7g05639 1105 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Trre7g05639 1105 MobiDBLite consensus disorder prediction 678 713 - -
Trre7g05639 1105 Gene3D - 295 366 - -
Trre7g05639 1105 Gene3D - 129 232 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05639 Trre-Chr7 61738827 61744397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05639 14 483 B3 DNA Binding Superfamily AT1G19220 68.125 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre7g05639 B3 9.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05639 - - ccaj:109803454 1557.35