Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g05630 | ATGGCACTAATAACTAATATTATGAACAATAAAACCATATTCATTCTATTGTTATGTCTTGTTTCATCTTATGCTGAGTCTGACTCTGAATTGCTCCTCAAGGTAAAGGACAATCTAGAAAAAAACGACAATGTATTGACATCATGGAACACAACAACAATTCCTTGTGACGGCGATCATAGTAATTGGTACGGTGTTCGTTGTTATCAAGGAAAAGTTTGGGGATTGAAGCTTGAGAATATGGGGCTAAAAGGGGTCATTGATGTTGATTCTCTTAGGCAATTACCATATCTTAGAACTATTAGTTTCATGAATAATGATTTTGAAGGTGGTTGGCCTGAGATTAACAAACTTGTTGGTCTTAAATCGATTTTTCTTTCGAATAACAAATTTTCTGGAGACATTCCTGGTGATGCTTTTGAAGGTATGATGTGGTTGAAGAAAATTCATTTGTCGAATAATCAGTTTACAGGTGTTATTCCACCTTCTGTGGTTTTGTTACCAAAGCTTATGGAATTGAGATTGGATGGAAACAAATTCATTGGTCCTCTTCCTCATCTTAGACAATCCAGATTGAAATCATTCAATGTAGCTAATAATCAGTTGCATGGACAAATACCAACCACACTTAGTAAAATCGCCGTTTCTTCCTTTTCTGGTAATGAAGGTTTATGTGGAGCTCCATTGGCTGCATGTACTGCAAAGAAGCCATCAATTGCAAGTATTTGTGTGGTTGCTGTGGTTGTTTGTGTGGCACTGATTGTGATCGGAGTCACAATATTTTTCATCCTTCATCGGCGAAGAAACCAGGAGCCATCACCAGGTCTAGAGAATCCTCCTTCAGGCCACCACAACAACAAAATAGGACGAGGAGATATTGGTAATGATAGTATGAAATCAACAAGATCAGTGAGTTCCACTCACAGCAGAAGAGGTGATCAAATGAAGTTATCTTTTATAAAAGATGACAGAGAAAGATTTGATTTGCAAGAGTTGTTGAGAGCTAATGCTGAGATTTTGGGAAGTGGTTGTTATAGTTCTTCTTATAAGGCTTCTTTGACAAGTGGAGCAATAGTTGTGAAGAGGTTTAAGCAAATGAATAATGTAGGGAAGGAAGAGTTTCAAGAACATATGAGAAGGATAGGAAGATTGAATCATCAAAATTTGATTCCTCTTGTGGCTTATTATTATAGAAAAGAGGAGAAGCTTTTGGTTACTGACTATGTTCAAAATGGAAGTCTCGCTGTTCGCCTTCATGGACATCAAGCACTAGGTGAACCAAGCCTTGATTGGCCAATAAGATTGAAGATTGTGAAAGGAATAGCAAAAGGACTTGAATATCTATACAAAGATATGCCAAGCCTAATTGCACCACATGGAAATCTCAAATCCTCAAATGTACTTCTAACTGAAACATTTGAACCAATCCTCACAGATTATGGATTAGTACCTGTAACAAACCAAGAAATGGCAAAGGACATAATGGTAATATACAAATCACCAGAATATTTACAACAAGGAAGAATAACAAAGAAAAGTGATGTTTGGTGTCTTGGAATATTAATATTGGAAATTTTAACTGGTAAATTTCCAGCTACATTTTTACAACAAGGTAAAGGAAGTGAGGTGAGTTTAGCAAATTGGGTTATTTCAGTAGTACCTGAGGAATGGAATAGTTCAGTGTTTGATAAAGAAATGGGTGAAACAAAGAATGGTGAGAGTGAGATGGAAAAACTTTTGAAAATTGCATTGAGTTGTTGTGAAGGTGATGTTGATAAAAGATGTGATTTGAAAGAAGCTGTAGAGAAAATTCAACAAGTGAAAGAGAGAGATGTTCATGATGATGATGATGGTGATGACAACATTTTTACAACTGACATGAAATGA | 1887 | 0.3604 | MALITNIMNNKTIFILLLCLVSSYAESDSELLLKVKDNLEKNDNVLTSWNTTTIPCDGDHSNWYGVRCYQGKVWGLKLENMGLKGVIDVDSLRQLPYLRTISFMNNDFEGGWPEINKLVGLKSIFLSNNKFSGDIPGDAFEGMMWLKKIHLSNNQFTGVIPPSVVLLPKLMELRLDGNKFIGPLPHLRQSRLKSFNVANNQLHGQIPTTLSKIAVSSFSGNEGLCGAPLAACTAKKPSIASICVVAVVVCVALIVIGVTIFFILHRRRNQEPSPGLENPPSGHHNNKIGRGDIGNDSMKSTRSVSSTHSRRGDQMKLSFIKDDRERFDLQELLRANAEILGSGCYSSSYKASLTSGAIVVKRFKQMNNVGKEEFQEHMRRIGRLNHQNLIPLVAYYYRKEEKLLVTDYVQNGSLAVRLHGHQALGEPSLDWPIRLKIVKGIAKGLEYLYKDMPSLIAPHGNLKSSNVLLTETFEPILTDYGLVPVTNQEMAKDIMVIYKSPEYLQQGRITKKSDVWCLGILILEILTGKFPATFLQQGKGSEVSLANWVISVVPEEWNSSVFDKEMGETKNGESEMEKLLKIALSCCEGDVDKRCDLKEAVEKIQQVKERDVHDDDDGDDNIFTTDMK | 628 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g05630 | 628 | Gene3D | Phosphorylase Kinase; domain 1 | 299 | 408 | - | - | |
| Trre7g05630 | 628 | ProSiteProfiles | Protein kinase domain profile. | 334 | 607 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre7g05630 | 628 | SUPERFAMILY | Protein kinase-like (PK-like) | 338 | 605 | IPR011009 | - | |
| Trre7g05630 | 628 | SUPERFAMILY | L domain-like | 26 | 230 | - | - | |
| Trre7g05630 | 628 | Gene3D | Ribonuclease Inhibitor | 190 | 232 | IPR032675 | - | |
| Trre7g05630 | 628 | Pfam | Leucine rich repeat | 120 | 180 | IPR001611 | GO:0005515 | |
| Trre7g05630 | 628 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 15 | 611 | IPR046959 | - | |
| Trre7g05630 | 628 | MobiDBLite | consensus disorder prediction | 608 | 628 | - | - | |
| Trre7g05630 | 628 | FunFam | pollen receptor-like kinase 1 | 302 | 408 | - | - | |
| Trre7g05630 | 628 | MobiDBLite | consensus disorder prediction | 271 | 312 | - | - | |
| Trre7g05630 | 628 | Pfam | Leucine rich repeat N-terminal domain | 26 | 68 | IPR013210 | - | |
| Trre7g05630 | 628 | Gene3D | Transferase(Phosphotransferase) domain 1 | 409 | 620 | - | - | |
| Trre7g05630 | 628 | Gene3D | Ribonuclease Inhibitor | 24 | 188 | IPR032675 | - | |
| Trre7g05630 | 628 | FunFam | Pollen receptor-like kinase 1 | 409 | 618 | - | - | |
| Trre7g05630 | 628 | Pfam | Protein kinase domain | 337 | 602 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre7g05630 | 628 | MobiDBLite | consensus disorder prediction | 296 | 312 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g05630 | Trre-Chr7 | 61688404 | 61690914 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g05630 | 13 | 626 | Receptor kinase-like Gene Family | AT5G35390 | 52.351 | 0.0 | 639 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-III | Trre7g05630 | Pkinase | 6.8e-30 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g05630 | - | - | gmx:100804368 | 888.641 |