Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05620 ATGGGGATTTGCTTCAGCATTGAAGAAAATCAAAAACACTTTTCCTTCTCCGATTCAATTTCAACAAATAAACCTAAATCAGGAAATGATTCCGGTGTTGCACGAGCGACAACTCCATTAGGTACTGGTTCCATGAATATCAAAGAACTTCGCGAAGGTGCTGGATACAGCAACGTTCACATTTTTACATATCAAGAATTGAGGCTTGCTACTAAGCAGTTTCGTCCTGATTTCATTCTTGGTGAAGGTGGATTTGGTGTTGTTTATAAAGGTGTCATTGATGATACTGTTAGAACCGGTTATAAATCCACTGAAGTCGCTATTAAGGAACTTAATCGCGAAGGATTTCAAGGCGATAGAGAATGGCTCGCTGAAGTTAACTACTTGGGTCAATTCAGTCACCCAAATCTTGTGAAGCTCTTTGGGTATTGCTGCGAGGATGAACACCGGTTGTTGGTCTATGAATACATGGCTAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAACGGGCTCAACACTGACTTGGTCAAAAAGAATGAAGATTGCTTTGCATGCTGCAAGAGGGCTTGCTTTTCTTCATGGCGCAGAAAGGCCCATCATATATCGTGACTTCAAGACATCAAATATCTTGTTAGATGCGGATTTCAATGCAAAGCTTTCTGACTTTGGCCTTGCAAAGGATGGGCCGATGGGGGATCAAACACATGTTTCAACACGAGTAATGGGAACATATGGGTATGCTGCTCCGGAGTATGTCATGACTGGGCATTTGACCGCTCGAAGTGATGTGTATGGTTTTGGGGTGGTGCTACTTGAATTACTTATTGGTAGGAGAGCACTAGACAAGAGCAGGCCCAGTCGAGAGCACAACTTGGTTGAGTGGGCACGGCCACTGTTGAATAATAATAAAAAACTTCTGAAAATTTTAGACCCGAAAGTAGAAGGGCAATATTCAAGTAAAACTGCAACAAAGGTCGCCCTTTTAGCATACAATTGTCTTAGCCAAAACCCAAAAGGCAGACCTCTCATGAGTCAGGTTGTTGAAATCCTTGAAAACTTTCAGTCAAATGAGGAAGGTCAAATCCTTCAAAGTGGTGGTAGTAGTATAACCATTTATGAGGTTCCAAAGGGCAGCAATGATACTCCGACTAAGGGCTAA 1161 0.4238 MGICFSIEENQKHFSFSDSISTNKPKSGNDSGVARATTPLGTGSMNIKELREGAGYSNVHIFTYQELRLATKQFRPDFILGEGGFGVVYKGVIDDTVRTGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLFGYCCEDEHRLLVYEYMASGSLEKHLFRRTGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLIGRRALDKSRPSREHNLVEWARPLLNNNKKLLKILDPKVEGQYSSKTATKVALLAYNCLSQNPKGRPLMSQVVEILENFQSNEEGQILQSGGSSITIYEVPKGSNDTPTKG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05620 386 ProSitePatterns Protein kinases ATP-binding region signature. 80 109 IPR017441 GO:0005524
Trre7g05620 386 Gene3D Transferase(Phosphotransferase) domain 1 157 371 - -
Trre7g05620 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Trre7g05620 386 FunFam Serine/threonine-protein kinase BIK1 42 156 - -
Trre7g05620 386 Pfam Protein tyrosine and serine/threonine kinase 80 351 IPR001245 GO:0004672|GO:0006468
Trre7g05620 386 MobiDBLite consensus disorder prediction 16 40 - -
Trre7g05620 386 CDD STKc_IRAK 80 354 - -
Trre7g05620 386 PANTHER OS01G0588500 PROTEIN-RELATED 38 355 - -
Trre7g05620 386 ProSiteProfiles Protein kinase domain profile. 74 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05620 386 FunFam Probable serine/threonine-protein kinase PBL8 157 368 - -
Trre7g05620 386 Gene3D Phosphorylase Kinase; domain 1 49 156 - -
Trre7g05620 386 SUPERFAMILY Protein kinase-like (PK-like) 55 352 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05620 Trre-Chr7 61646775 61650182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05620 4 381 Glycoside Hydrolase AT3G07070 45.052 8.97e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre7g05620 PK_Tyr_Ser-Thr 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05620 - - gmx:100800465 660.218