Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05576 ATGGAATCAGATTTTGAAACGAACGATATCCTCACACTGTCACAAGATTCATTTGATACCAATGACAATGATAATTTAGATGTTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGATAGGGGAGTACTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTTCCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATTACTTGTGTTCCAGTGTATGATACCATAGGGAGCAATAAAGTTGAAGATGGCTCACTCTTCGGAGACGATGACGATGACTGGTCGATTGAAGGGGAGACTAACAGTCTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTACATGCTTGGATGGTGATGATTGCAAAATTCGAAATGGACTGGCAAGTATTGAAGGAGATTCTGGTCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTCTGTGTGGGATTTGATACTGAAGGTACATCTGAGAGTACATGGTTATGCCCAAGATGTGTGGTTGATGAAGTTTCTAAAGAAACAGATACCAATTCAATAAAGAAGGCAACCCTGGAATGTAACCCAGATAACAATAACATTAAATGTCATGCTGAGGATTCCAGATTAGTCTCCGTGTCCATTGCTGATACTGGAGAGACTGCTGTTGTTGTCTCAATGGTTGACAGAAACAAATGGGTTCCAGAAACAAGCGAGAGAAGTCAATTGCCTCCTGAAGTTGATAGGGATTTTTTGACTGAATCATGCAGTTTAATGTCCCAAAAAAATAATCAGCTGCAGGGAACAGAGAAGACAACTATGTCACCGATCATGGAGGGAGAAAAACTAGAACTGTCCTTATCACACAACATGTCATGTAACCCAACTTCTAAATCCTCCGTCCTAAATGATTTAAAGAAAAGTGATAATGGAACAAGATGTGAACTGAGTAGCTTTGACGGAGTCAAGTTATTTGATGAGTCCAATAGTCCATGCAAAATTGAATCTGATATGGGTCTTCATCTTGGTTTGTCGGTGGGCTCTTTTTTATCCGTTGATAATGTGAACAAGAGCAAAACAAAAGATCAAGCAACCAATGTCCCATGCTCGAGTCCAGAAGAATTTCTTTTGAAAGGAGATGAAATTGAAACCAATGCTTGTGAGGACAATGCCAGGCTGACTGGTAGAAAGAGGAAGCATGTTGATATCAGTCACGAGCAAGTTCATATAAAAGTTGATGAAGATGCCAAGCCTGAACTATCAGCTGAAGTTTCACAAAAGAAAATTAGAGCGGCTGCTAGTCAAATGATTAATGCTAATGACTCGGTTGATGCTCAACTTTCTGACAACACTAAGAAGAGGCCTGTTTTAAAACATTCTCCAACAAAGGAAATTGTGGCATCAGATATAATGGATATCGTTAAAGGGACGAACCGTAGGCTTTCCAAGGGACTTGCAGACACTAATGCTAGTAGAAAGTTGGCTGAAAAGAAAGAAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAGAGAGGTTCTGATGATGGAGAATCATCCTCATTAGTCCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGCAACAAATCCTCTATAAACTTCGGGGAAAACCATTTTGATAAAAATCTTCTTGAAGCATTCAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCCCCCTCAGCTCTGAAGGCAAGGAAGTCAATGTTGCAGAAAGGAAAAGTACGAGAAAATCTAACAAGGAAAATTTTTGCGGCATCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCACGAGAGCTTCAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTCTTAAGAAAAAGTTCAGAGAACCCAGAATCAGAGCAAGCTCCTGAACCTCAGGCCAAGAATCCAATTCTCTCCAGATTGTATATAGCAGACACATCTGTTTTCCCACGGAAAGCTGATGTCAAACCTTTTTCAGAGCAGACTAAACAAAATAACTCAACAGCAAAAGGACCAAATCAATCTCTTGATAACATGACTATTAAAGCAACAGAGGTAAATAATCTTTTATCAAAGACCGGAGTTTGTTCTTCTGAGAAAAAAGTAGATAAGAAGATTGTACGCGGTCCGGTTGGTAAAGTACATTTAAGCAGTCACTCAGAAGGGACATCAGTTTCTTCTTCAGCTGGTGCCAAAGTTGGCACAAAAGAGTCAGGCCTGAAATCCGATTCTATGAAAAGTGATAAAAGAAAATGGGCATTGGAGGTTCTTGCAAGGAAAACAGCTGTTGCAAGCAGTAACACAGCAAATGAAAGTCAGGAAGACGATGCAATTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGATATGAGACCAGTGTTGGCACCTTGTCGCCACAATAAAATTCCTTTATCAGTGAGGCAGACACAGCTTTACCGCCTGACGGAACGCTTATTGAGGAACACAAATCTGACAATTATTCACAGAACTGCATATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCTAGTGTATCAGAATCTTTGTTCACAAGAGCTATTGCGTCGCACAAATAACACAAAATCCAATGTAGACACAGACACTAGTCCACCAACCTCATCGCCAGTGCATACTGATCAATCAGAACCGCCAGTGCAGACTGATCAATCTGAACTGAATACTGATGATCTTTCTACTGACCCTGCAGTTCAAATAGCATTGCAAAATGCTGGGCTGTTGTCGGATTCGCCACCTAGCAGTCCACATAAGAACAAAGAAATACAAAATGAAAATGCAATGTCAGGGCCTGATGATATACTTGAATTAGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGAGGATGATTACATAGGCGCTAGTGTTACAAATATCCCAAACCTAACACAAGAGCAAAGTGAACCAAAAGTGAAACTTATTTTTTCCACCACGAGCTTGAAGAAAACAAATAATGCTTCGGATTCTGCAGACATCAAGGGGTCTGAAAACAATGAAATGCCAGGAGATGCCTCTCGCTCACCAAACTGTCACAGTGATGCAGTCCACAGGGATTCTACCATTGATGCGGAGATTGGCCAGCCTTCTGCTTCTTCTGGGCTACAACCATGTGAGGGTGCTGTTGAGCCGGTTGATTCAGAATTTGAAGACTTATATGGCCCTGATAAAGAACCACTTATAAAAAAGTTTCCAGATAGTGAATTACTATCACCACACGGAGAAGGCAAGACAGAAAGTCAAAGCGAGAATAATGATTGCCATAAGGACGAAGAACAAGTCTTAGACAAACTAGAAAATGGTGCTGAAGTCAGGAATGAGAATCTTGCAGAAAATGCGTCTGTCCCCACTATCACGGAAAAATCTAATATATCTGAGACCGATGAAAATTTTCAAAGGAAGGAAGAGAAATCTGACATCCCTGCCCAGCAGTCCAATAATGAAAATCAAGTAGCGAAGAAGGTAGAAGCATACATCAAAGAGCATATCAGGCCATTGTGCAAGAGTGGTGTTATCTCGGCTGAACAGTACAGGTGGGCTGTTGCAAAAACCACTGATAAGGTTATGAAGTATCATTCCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTCGCAGAGCAGTATGTTGAAACAGCCCAACAGAATAGAAAAAGTTGA 3858 0.4012 MESDFETNDILTLSQDSFDTNDNDNLDVEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSLFGDDDDDWSIEGETNSLSFPSYYIDENAVTCLDGDDCKIRNGLASIEGDSGLDTSIACDSCDIWYHAFCVGFDTEGTSESTWLCPRCVVDEVSKETDTNSIKKATLECNPDNNNIKCHAEDSRLVSVSIADTGETAVVVSMVDRNKWVPETSERSQLPPEVDRDFLTESCSLMSQKNNQLQGTEKTTMSPIMEGEKLELSLSHNMSCNPTSKSSVLNDLKKSDNGTRCELSSFDGVKLFDESNSPCKIESDMGLHLGLSVGSFLSVDNVNKSKTKDQATNVPCSSPEEFLLKGDEIETNACEDNARLTGRKRKHVDISHEQVHIKVDEDAKPELSAEVSQKKIRAAASQMINANDSVDAQLSDNTKKRPVLKHSPTKEIVASDIMDIVKGTNRRLSKGLADTNASRKLAEKKENMAGLRVKKIMKRGSDDGESSSLVQNLRKEIREAVRNKSSINFGENHFDKNLLEAFRAAITGPKTELVNKLSPSALKARKSMLQKGKVRENLTRKIFAASNGRRKRAWDRDCEIEFWKYRCTRASKPEKIETLKSVLDLLRKSSENPESEQAPEPQAKNPILSRLYIADTSVFPRKADVKPFSEQTKQNNSTAKGPNQSLDNMTIKATEVNNLLSKTGVCSSEKKVDKKIVRGPVGKVHLSSHSEGTSVSSSAGAKVGTKESGLKSDSMKSDKRKWALEVLARKTAVASSNTANESQEDDAIFKGNYPLLAQLPTDMRPVLAPCRHNKIPLSVRQTQLYRLTERLLRNTNLTIIHRTAYTELAVADAINIEKEVADRSNSKLVYQNLCSQELLRRTNNTKSNVDTDTSPPTSSPVHTDQSEPPVQTDQSELNTDDLSTDPAVQIALQNAGLLSDSPPSSPHKNKEIQNENAMSGPDDILELDSHPELDIYGDFEYDLEEDDYIGASVTNIPNLTQEQSEPKVKLIFSTTSLKKTNNASDSADIKGSENNEMPGDASRSPNCHSDAVHRDSTIDAEIGQPSASSGLQPCEGAVEPVDSEFEDLYGPDKEPLIKKFPDSELLSPHGEGKTESQSENNDCHKDEEQVLDKLENGAEVRNENLAENASVPTITEKSNISETDENFQRKEEKSDIPAQQSNNENQVAKKVEAYIKEHIRPLCKSGVISAEQYRWAVAKTTDKVMKYHSKSKNANFLIKEGEKVKKLAEQYVETAQQNRKS 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05576 1285 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Trre7g05576 1285 SMART PHD_3 133 185 IPR001965 -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 905 945 - -
Trre7g05576 1285 Pfam Ring finger domain 32 72 IPR001841 -
Trre7g05576 1285 SUPERFAMILY FYVE/PHD zinc finger 147 191 IPR011011 -
Trre7g05576 1285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 185 IPR013083 -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 961 992 - -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 748 778 - -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 1170 1185 - -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 1186 1201 - -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 693 711 - -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 961 980 - -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 1040 1066 - -
Trre7g05576 1285 Pfam PHD-finger 150 185 IPR019787 -
Trre7g05576 1285 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 690 711 - -
Trre7g05576 1285 SMART ring_2 33 71 IPR001841 -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 1110 1164 - -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 751 767 - -
Trre7g05576 1285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 79 IPR013083 -
Trre7g05576 1285 ProSiteProfiles Zinc finger PHD-type profile. 65 187 IPR019787 -
Trre7g05576 1285 SUPERFAMILY RING/U-box 25 78 - -
Trre7g05576 1285 MobiDBLite consensus disorder prediction 1040 1210 - -
Trre7g05576 1285 PANTHER RING FINGER PROTEIN 41, 151 116 1276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05576 Trre-Chr7 61339455 61348206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05576 33 84 C3H Transcription Factor Family AT3G58030 37.037 5.11e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre7g05576 PHD 2.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05576 - - gmx:100808102 1802.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05576 7 61339455 61348206 Trre7g05576 7 61339455 61348206 ECH