Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05564 ATGGATATTGCTTTTCCTTTCGACTTAATAGATGCTGATCAATATCCTCGTTGTAGCTATTTTCCAAATCCATTCTTCCAACTTTCTTGTAACAGCCAAAACCAAACAATCCTCAACCTCCCCGAAACAAATAACTTAATCATTAAAAACATCGATTACAAAACCCAAACAATTAAAGTCAACGACCCCAAAGGATGTCTCGCAAAACGTTACTTAGATGACAATTTTGACCTTTCAGATTCACCTTTTAAATTAAACCCCGAAATTTACAATCTTAACCTCACTTTCCTTCGTTGTCCTTCCAACATTACTACAGTTTCTTCATCATCATCATTTCAATTTCCACTAACACCAATTTCTTGTTTAAGCAACGATGAAAAATATTCGAATTTGTCTTCTTCTTCGATTGTAGTTTTATGGGCGCCACCTTTGGCGAATACGACACTAATTCAAATGTGTGAGGTGATTTCAACGGCTTTTGTTCCGTTGCCGTGGAAGGATGTGAATATGTGGCCATTTTGGCGTGATATTAACAGTGATGTTGAGTTGGTGTGGACTGATCCTAGATGTGGTGGGTGTGCACTTAATGGTCAAGTTTGTGGGTTTTCTGAGGATTTTAAAAATAACCTTCAAGTTCAATGTTTTGACAATTCCTCCAATGAAGGTCTCTCAAGAAGTGCCAAATACGGTATTGCAATAGGAGTGGGAATACCTATACTTGTATGTCTAATTGGCTTTGCTTGCTTTTGTTGTGGTAAGATGAGAACAACCCTACTTGATGAACAAAGAAGCTCATCAAATGTTCCTACAATATCAATTTCCTTAGAGCCACTCCCCTTTTTTGTAACGGGTCTTGACGGTGCCACAATTGAAAAGTATCCCAAAATTCTTATTGGAGAAAGTGGACGTTTATTGAAGCCAAATGACAATACTTGCTCAATTTGTTTATCTGAATATCAACCTAAAGAGACATTGAGAAGCATCCCTGAGTGTAACCATTATTTTCATGTTGCTTGTATTGATGAGTGGCTCAAAATGAATGGTACATGCCCTATATGTAGAAATTCATTGGAGGCATATTCTACCACGGGTCCTTATCTTGCCTCGCTATTGCTATCCCCAAACTCATCATCATTGTCCACTTCAAGATAA 1152 0.3767 MDIAFPFDLIDADQYPRCSYFPNPFFQLSCNSQNQTILNLPETNNLIIKNIDYKTQTIKVNDPKGCLAKRYLDDNFDLSDSPFKLNPEIYNLNLTFLRCPSNITTVSSSSSFQFPLTPISCLSNDEKYSNLSSSSIVVLWAPPLANTTLIQMCEVISTAFVPLPWKDVNMWPFWRDINSDVELVWTDPRCGGCALNGQVCGFSEDFKNNLQVQCFDNSSNEGLSRSAKYGIAIGVGIPILVCLIGFACFCCGKMRTTLLDEQRSSSNVPTISISLEPLPFFVTGLDGATIEKYPKILIGESGRLLKPNDNTCSICLSEYQPKETLRSIPECNHYFHVACIDEWLKMNGTCPICRNSLEAYSTTGPYLASLLLSPNSSSLSTSR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05564 383 ProSiteProfiles Zinc finger RING-type profile. 312 354 IPR001841 -
Trre7g05564 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 360 IPR013083 -
Trre7g05564 383 Pfam Wall-associated receptor kinase galacturonan-binding 2 62 IPR025287 GO:0030247
Trre7g05564 383 CDD RING-H2_EL5-like 312 354 - -
Trre7g05564 383 SMART ring_2 312 353 IPR001841 -
Trre7g05564 383 SUPERFAMILY RING/U-box 304 360 - -
Trre7g05564 383 Pfam Ring finger domain 310 354 IPR001841 -
Trre7g05564 383 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 356 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05564 Trre-Chr7 61240165 61243069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05564 1 356 C3H Transcription Factor Family AT2G46495 33.889 4.30e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05564 - - tpra:123915638 553.518