Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05563 ATGGCTTCCTCAACTCTAATATGTGTATGTTACTATGTCTTAATTATTATTTTCCACCTTCAAACTTCTAAAGGCAAACAAATATGCAAAACCTTAACATGTGGTGACATGGATATTGCTTTTCCTTTCGACTTAATAGATGCTGATCAATATCCTCGTTGTAGCTATTTTCCAAATCCATTCTTCCAACTTTCTTGTAACAGCCAAAACCAAACAATCCTCAACCTCCCCGAAACAAATAACTTAATCATTAAAAACATCGATTACAAAACCCAAACAATTAAAGTCAACGACCCCAAAGGATGTCTCGCAAAACGTTACTTAGATGACAATTTTGACCTTTCAGATTCACCTTTTAAATTAAACCCCGAAATTTACAATCTTAACCTCACTTTCCTTCGTTGTCCTTCCAACATTACTACAGTTTCTTCATCATCATCATTTCAATTTCCACTAACACCAATTTCTTGTTTAAGCAACGATGAAAAATATTCGAATTTGTCTTCTTCTTCGATTGTAGTTTTATGGGCGCCACCTTTGGCGAATACGACACTAATTCAAATGTGTGAGGTGATTTCAACGGCTTTTGTTCCGTTGCCGTGGAAGGATGTGAATATGTGGCCATTTTGGCGTGATATTAACAGTGATGTTGAGTTGGTGTGGACTGATCCTAGATGTGGTGGGTGTGCACTTAATGGTCAAGTTTGTGGGTTTTCTGAGGATTTTAAAAATAACCTTCAAGTTCAATGTTTTGACAATTCCTCCAATGAAGGTCTCTCAAGAAGTGCCAAATACGGTATTGCAATAGGAGTGGGAATACCTATACTTGTATGTCTAATTGGCTTTGCTTGCTTTTGTTGTGGTAAGATGAGAACAACCCTACTTGATGAACAAAGAAGCTCATCAAATGTTCCTACAATATCAATTTCCTTAGAGCCACTCCCCTTTTTTGTAACGGGTCTTGACGGTGCCACAATTGAAAAGTATCCCAAAATTCTTATTGGAGAAAGTGGACGTTTATTGAAGCCAAATGACAATACTTGCTCAATTTGTTTATCTGAATATCAACCTAAAGAGACATTGAGAAGCATCCCTGAGTGTAACCATTATTTTCATGTTGCTTGTATTGATGAGTGGCTCAAAATGAATGGTACATGCCCTATATGTAGAAATTCATTGGAGGCATATTCTACCACGGGTCCTTATCTTGCCTCGCTATTGCTATCCCCAAACTCATCATCATTGTCCACTTCAAGATAA 1260 0.3722 MASSTLICVCYYVLIIIFHLQTSKGKQICKTLTCGDMDIAFPFDLIDADQYPRCSYFPNPFFQLSCNSQNQTILNLPETNNLIIKNIDYKTQTIKVNDPKGCLAKRYLDDNFDLSDSPFKLNPEIYNLNLTFLRCPSNITTVSSSSSFQFPLTPISCLSNDEKYSNLSSSSIVVLWAPPLANTTLIQMCEVISTAFVPLPWKDVNMWPFWRDINSDVELVWTDPRCGGCALNGQVCGFSEDFKNNLQVQCFDNSSNEGLSRSAKYGIAIGVGIPILVCLIGFACFCCGKMRTTLLDEQRSSSNVPTISISLEPLPFFVTGLDGATIEKYPKILIGESGRLLKPNDNTCSICLSEYQPKETLRSIPECNHYFHVACIDEWLKMNGTCPICRNSLEAYSTTGPYLASLLLSPNSSSLSTSR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05563 419 Pfam Wall-associated receptor kinase galacturonan-binding 29 98 IPR025287 GO:0030247
Trre7g05563 419 CDD RING-H2_EL5-like 348 390 - -
Trre7g05563 419 SMART ring_2 348 389 IPR001841 -
Trre7g05563 419 ProSiteProfiles Zinc finger RING-type profile. 348 390 IPR001841 -
Trre7g05563 419 SUPERFAMILY RING/U-box 340 396 - -
Trre7g05563 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 396 IPR013083 -
Trre7g05563 419 Pfam Ring finger domain 346 390 IPR001841 -
Trre7g05563 419 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 392 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05563 Trre-Chr7 61240057 61243069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05563 27 392 C3H Transcription Factor Family AT2G46495 34.140 4.52e-52 176