Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05562 ATGTCTTCCACAACTATAATAACTGTATTTTATGTCTTAATTATTATTTTCCACCTTCAAACTTCTAAAGCCAAACAAATAATCTGCAAAACCTTATCATGTGGTGACATAGATATTGCTTTTCCTTTTGGGTTAAAAGAAGCTAATCAAGATCCTCTTTGTAGCTATTTTCCAAATCCAACCTTCCAACTTTCTTGCAACAACCAAGGCCAAACAATCCTCAATCTCCCCAAAACAGAGAGCCTAATCATTAAAAACATCAATTACAAAACCCAAACAATCCAAGTTATCGATCCCAAAGGATGTCTTCCAAAACGTTACTTAAATAAAAAATTTAACCTTTCAGATTCACCTTTTAAACTAAACCCCGAAATTTACAACACTAATGGTGATAACCTTACTTTCATTCGTTGTCCTTCCAACGTTACTACCTATTCATCATCTCGATTTCCATTAGCACCAATTTCTTGTTTAAGCAACGAGGAAGAACGTTCGAACTTGTCTTCCTCTTCGGTTATAGTTTCTTGGGTACCGACTGAATTTATCGATACAACGTTGTTACATCCGTGTGAGGTGATTTCAACGGCTCTTGTTCCGTTACCATGGATGGATATGACTATGTGGCCATCTTGGCCTGATCTTAATAGTGATGTTGAATTGGTGTGGAATGAACCTAGATGTGGGAATTGTGCAGTTCATGATCAAGTTTGTGGATTCTCTGAGGATCAAAATATGGTTCAAGTTCAATGTTTCCCTAATACTTCCAATCAAGGTCTCTTACAAAGTGCCAAATTCGGCATTGCTTTTGGATTGGGAATACCTGCACTTTTATTAATTGCCATAGCTTGCTTCTGTAATAATAGGAGAACAACACAACTTCATGGACAAAGAAACTCATCAAATGTTCCTACAATATCAATTTCCTTAGAGCCACTCCCTTCTTTTGTAACGGGTCTTGACGGTGCCACAATTGAAAAGTATCCCAAAACTCTTTTTGGGGAAAGTGGACGTTTATTGAAGTCTAATGACAATACTTGCTCAATTTGTTTATCTGAATATCAACTTAAAGAGACCTTGAGAAGTATCCCTGACTGTAACCATTATTTTCATGCTGCTTGTATTGATGAGTGGCTCAAAATGAATGGTACATGCCCTATTTGTAGAAATTCACCGGAGGTATATGCTTCTACTAGTCCATATTTTGCTTCGTTATTGCTATCCCCAAATTCCTCATCATTGCCCTCTACTAGATAA 1254 0.3684 MSSTTIITVFYVLIIIFHLQTSKAKQIICKTLSCGDIDIAFPFGLKEANQDPLCSYFPNPTFQLSCNNQGQTILNLPKTESLIIKNINYKTQTIQVIDPKGCLPKRYLNKKFNLSDSPFKLNPEIYNTNGDNLTFIRCPSNVTTYSSSRFPLAPISCLSNEEERSNLSSSSVIVSWVPTEFIDTTLLHPCEVISTALVPLPWMDMTMWPSWPDLNSDVELVWNEPRCGNCAVHDQVCGFSEDQNMVQVQCFPNTSNQGLLQSAKFGIAFGLGIPALLLIAIACFCNNRRTTQLHGQRNSSNVPTISISLEPLPSFVTGLDGATIEKYPKTLFGESGRLLKSNDNTCSICLSEYQLKETLRSIPDCNHYFHAACIDEWLKMNGTCPICRNSPEVYASTSPYFASLLLSPNSSSLPSTR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05562 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 392 IPR013083 -
Trre7g05562 417 SMART ring_2 346 387 IPR001841 -
Trre7g05562 417 CDD RING-H2_EL5-like 346 388 - -
Trre7g05562 417 Pfam Ring finger domain 344 388 IPR001841 -
Trre7g05562 417 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 391 IPR046948 -
Trre7g05562 417 SUPERFAMILY RING/U-box 339 396 - -
Trre7g05562 417 Pfam Wall-associated receptor kinase galacturonan-binding 29 98 IPR025287 GO:0030247
Trre7g05562 417 ProSiteProfiles Zinc finger RING-type profile. 346 388 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05562 Trre-Chr7 61235623 61238058 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05562 29 391 C3H Transcription Factor Family AT2G46495 34.232 3.23e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05562 - - tpra:123915638 649.818