Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05560 ATGAATTATTCGGTTGTGGCTATGATGTCTGATGCTGTTTTTGCTACACCGTGGGTATCATTGTGTGAGTTTATTTCATCGGCTTTGATACCTATTGAAGAAGAAGGGAATAATTGGTTGTTTTGGAGTGATTATTATTCTGATATACCTTTGGAGTGGGATAGTCCTAATTGTGGAAATTGTGAAGCTCGTGGAGGAAGATGCGGATTGGTTGAAGAGCATACTCTTATTAGCATTGCTTGTTATGATCTTCCCACCACTCAAGGTCTATCGAAGAAAGTCAAGTATGGTTTAACTCTAGGTCTTGGAATACCTGGAATCTTAGGTATTATTGTGCTTACATGTATGTTATGCAACAAAAAGAACACAACTAATCAATTACATCGTCAAAGAGACACTGAATTTTCCACCATGATTATGCCACACCCCCCATTTGTAGTTATGGGCCTTGATGGGCCAACAATAGAAAGATATCCTAAAACCCAACTTGGTGAAAGTGGACGATTGCCTAGGCCCAATGACAATATTTGCTCAATATGTCTTTGTGAATACCAACCAAATGAAGTATTGAGGACTATCCCAGAATGTAATCACTATTTTCATGTGAATTGTATAGATGGATGGCTCAAGGGTAATGCTACTTGCCCTTTGTGTAGAAATTTTCCAGAGAGATCTACTTCATTTCCTTCCTTTTTGCCTGTATCACCAACTTCTTAA 717 0.3835 MNYSVVAMMSDAVFATPWVSLCEFISSALIPIEEEGNNWLFWSDYYSDIPLEWDSPNCGNCEARGGRCGLVEEHTLISIACYDLPTTQGLSKKVKYGLTLGLGIPGILGIIVLTCMLCNKKNTTNQLHRQRDTEFSTMIMPHPPFVVMGLDGPTIERYPKTQLGESGRLPRPNDNICSICLCEYQPNEVLRTIPECNHYFHVNCIDGWLKGNATCPLCRNFPERSTSFPSFLPVSPTS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05560 238 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 222 IPR046948 -
Trre7g05560 238 SMART ring_2 177 218 IPR001841 -
Trre7g05560 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 223 IPR013083 -
Trre7g05560 238 Pfam Ring finger domain 176 219 IPR001841 -
Trre7g05560 238 ProSiteProfiles Zinc finger RING-type profile. 177 219 IPR001841 -
Trre7g05560 238 SUPERFAMILY RING/U-box 172 221 - -
Trre7g05560 238 CDD RING-H2_EL5-like 176 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05560 Trre-Chr7 61230176 61232503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05560 96 225 C3H Transcription Factor Family AT5G07040 45.802 3.59e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05560 - - mtr:25502189 394.43