Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05540 ATGGAGCAGTTGCGTCTCGAGAAGGAGAAGACCGAGGAGTTGTTGAAAGCCAAAGATGAGATCTTGAAGCAAAAGGATGAAGAACTCGAAAATCGGGGAAAGGAGCAGGAGAAACTTCAAGTTGAACTTAAGAAATTGCAGAAGTTGAAGGAATTCAAACCCACCATGAATTTGCCTATGGTGAAAGACAAGAAGAAGAATGCATGCCCTGAGAAAAAGAGGCCTACACCAGCCTACATGTTATGGGTCAAAGACCAATGGCATGAGGTTAAGAAGGAGAATCCAGAGGCAGAATTTAAGGACATTTCAAACATGCTTGGTGCTAAATGGAAGACAGTTACTGCAGAAGAGAAGAAACCTTATGAGGAGAAATACCATGCTGAAAAAGAAGCTTATTTGCAAGTAATTACAAAGGAAAAACGTGAGACTGAAGCAATGAAACTATTGGAAGAAGAACAAAAGCAAAAAACTGCAATGGAATTGCTTGAACAGTATATGCAATTCAAACAAGAGACAGAAAAAGAGAACAAGAAGAACAAGAAAGAAAAGGATCCATTGAAACCAAAGCATCCTATGTCTGCTTATTTCTTGTTTACCAATGATAGGAGAGCAGCCCTTCTTGCTGACAACAAGGGTATCATGGAGTTAATTGATAATATCATTGAATTGTATTCTTTGACATATGTAGCACGGACACTTCAGATAAGGCGTCCATTATTCGAACACTATGTGTATATAATCCACGGTCAAACTCGTATGTCCACCAATGTCCCTGATAGCATGGATGTGGTTTCCAAGATCACTTCTGAAGAATGGAAAAACATGACTGAAAAACAAAAGAGGCCCTATGAAGAGATGGCAAAGAAGAACAAAGAGAAATATGCTGAAGAAATGGAAGCTTACAAACAGAAAAAAGAAGAGGAGGCTGCAAATCTAATGAAGGAAGAGGAAGAACATATGAAACTTCAGAAACATGAAGCCTTGCAATTACTCAAGAAGAAGGAAAAAACTGAAAACATGATCAAGGAAACAAAATTGAATCGTCAGAAGAAAAAACAACATAACAAGGAAGATAAGAACTCTGATCCAAACAGGCCTAAAAGACCTCCATCCTCATATATTCTATTCAGCAAAGAAGCAAGGAAGAACATATTGGAGGAACGTCCTGGAATTGGTTCAAACATGCTGACTACACTTGTTTCATTGAAGTGGAAGGATATGAGTGAGGAAGATAAACAAGTGTGGAATGGAAAAGCATCTGAAGCTATGGATGCATACAAGAAGGAAATGGAGGAATACAACAAATCAATTGTTGCAAAGCTGGAGCAGAAAACAGATGAAGAATGA 1347 0.3838 MEQLRLEKEKTEELLKAKDEILKQKDEELENRGKEQEKLQVELKKLQKLKEFKPTMNLPMVKDKKKNACPEKKRPTPAYMLWVKDQWHEVKKENPEAEFKDISNMLGAKWKTVTAEEKKPYEEKYHAEKEAYLQVITKEKRETEAMKLLEEEQKQKTAMELLEQYMQFKQETEKENKKNKKEKDPLKPKHPMSAYFLFTNDRRAALLADNKGIMELIDNIIELYSLTYVARTLQIRRPLFEHYVYIIHGQTRMSTNVPDSMDVVSKITSEEWKNMTEKQKRPYEEMAKKNKEKYAEEMEAYKQKKEEEAANLMKEEEEHMKLQKHEALQLLKKKEKTENMIKETKLNRQKKKQHNKEDKNSDPNRPKRPPSSYILFSKEARKNILEERPGIGSNMLTTLVSLKWKDMSEEDKQVWNGKASEAMDAYKKEMEEYNKSIVAKLEQKTDEE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05540 448 SUPERFAMILY HMG-box 361 436 IPR036910 -
Trre7g05540 448 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 140 IPR009071 -
Trre7g05540 448 Coils Coil 151 182 - -
Trre7g05540 448 Coils Coil 284 325 - -
Trre7g05540 448 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 216 IPR044601 GO:0003677
Trre7g05540 448 SUPERFAMILY HMG-box 57 134 IPR036910 -
Trre7g05540 448 Coils Coil 1 49 - -
Trre7g05540 448 MobiDBLite consensus disorder prediction 331 374 - -
Trre7g05540 448 Gene3D High mobility group box domain 168 306 IPR036910 -
Trre7g05540 448 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 366 434 IPR009071 -
Trre7g05540 448 Pfam HMG (high mobility group) box 264 302 IPR009071 -
Trre7g05540 448 Pfam HMG (high mobility group) box 366 434 IPR009071 -
Trre7g05540 448 Pfam HMG (high mobility group) box 73 134 IPR009071 -
Trre7g05540 448 SMART hmgende2 187 303 IPR009071 -
Trre7g05540 448 SMART hmgende2 365 435 IPR009071 -
Trre7g05540 448 SMART hmgende2 71 141 IPR009071 -
Trre7g05540 448 SUPERFAMILY HMG-box 187 306 IPR036910 -
Trre7g05540 448 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 188 302 IPR009071 -
Trre7g05540 448 Gene3D High mobility group box domain 347 446 IPR036910 -
Trre7g05540 448 Coils Coil 416 443 - -
Trre7g05540 448 Gene3D High mobility group box domain 67 148 IPR036910 -
Trre7g05540 448 Coils Coil 327 354 - -
Trre7g05540 448 CDD HMG-box_AtHMGB6-like_rpt1 73 140 - -
Trre7g05540 448 MobiDBLite consensus disorder prediction 331 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05540 Trre-Chr7 61074043 61076042 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre7g05540 HMG_box 6.6e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05540 K09273 - gmx:100783033 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05540 7 61074043 61076042 Trre7g05540 7 61074043 61076042 ECH