Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05538 ATGGCGGTTAAAAGTTCCGTTTACCAGAAAAAATTCAAGATGCAAATCTTTGTCAAGACACTCACCGGCAAGACCATTACTCTCGAAGTTGAGAGTTTGGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAAGAAGGGATCCCACCGGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCTACCCTCCATTTGGTGCTCCGACTCCGTGGTGGTATGCAAATCTTTGTGAAGACTCTCACTGGTAAGACAATCACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTCAAGACCAAGATTCAGGACAAAGAAGAGTCTACCCTTCACCTTGTCCTTCGTCTGAGGGGTGGAATGCAAATCTTTGTGAAGACGCTGACCGGAAAGACTATTACCTTGGAGGTAGAAAGTTCAGACACAATTGATAATGTGAAGGCAAAAATACAGGATAAGGAAGGAATCCCACCTGATCAGCAGAGGTTGATCTTTGCTGGAAAGCAATTGGAGGATGGAAGGACTCTTGCCGACTACAATATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGCCTCCGTGGTGGATTTTAA 642 0.4517 MAVKSSVYQKKFKMQIFVKTLTGKTITLEVESLDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05538 213 SMART ubq_7 137 208 IPR000626 GO:0005515
Trre7g05538 213 SMART ubq_7 14 85 IPR000626 GO:0005515
Trre7g05538 213 SMART ubq_7 90 132 IPR000626 GO:0005515
Trre7g05538 213 FunFam Polyubiquitin 3 137 212 - -
Trre7g05538 213 FunFam Polyubiquitin-C 90 123 - -
Trre7g05538 213 Pfam Ubiquitin family 16 87 IPR000626 GO:0005515
Trre7g05538 213 Pfam Ubiquitin family 139 210 IPR000626 GO:0005515
Trre7g05538 213 Pfam Ubiquitin family 92 127 IPR000626 GO:0005515
Trre7g05538 213 Gene3D - 90 128 - -
Trre7g05538 213 ProSiteProfiles Ubiquitin domain profile. 137 212 IPR000626 GO:0005515
Trre7g05538 213 PANTHER UBIQUITIN 90 123 - -
Trre7g05538 213 SUPERFAMILY Ubiquitin-like 13 89 IPR029071 -
Trre7g05538 213 ProSiteProfiles Ubiquitin domain profile. 90 123 IPR000626 GO:0005515
Trre7g05538 213 ProSiteProfiles Ubiquitin domain profile. 14 89 IPR000626 GO:0005515
Trre7g05538 213 CDD Ubl_ubiquitin 137 212 - -
Trre7g05538 213 ProSitePatterns Ubiquitin domain signature. 163 188 IPR019954 -
Trre7g05538 213 ProSitePatterns Ubiquitin domain signature. 40 65 IPR019954 -
Trre7g05538 213 SUPERFAMILY Ubiquitin-like 123 212 IPR029071 -
Trre7g05538 213 CDD Ubl_ubiquitin 14 89 - -
Trre7g05538 213 Gene3D - 135 213 - -
Trre7g05538 213 Gene3D - 7 89 - -
Trre7g05538 213 FunFam Polyubiquitin 3 14 89 - -
Trre7g05538 213 PRINTS Ubiquitin signature 168 188 IPR019956 -
Trre7g05538 213 PRINTS Ubiquitin signature 147 167 IPR019956 -
Trre7g05538 213 PRINTS Ubiquitin signature 189 210 IPR019956 -
Trre7g05538 213 SUPERFAMILY Ubiquitin-like 89 136 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05538 Trre-Chr7 61060504 61063462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05538 14 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 4.05e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05538 - K08770 dpp:DICPUDRAFT_94309 358.607