Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05526 ATGAACAATCTCTATCCCAAAACTGTACGAATACTTCTCACCGACAACGACATCACCGACGATGAACATCAACCACTCCGCCGTGTCAAAACCTTCCTCAACGAAATCACAATCGAGAAACCAAACAACAACAACATTTCCAAGAAAAAAACTAACAGAGTCAAACCTAAAAAATCTCCGGCGACTCAACGGCGGCCGGTGATTTACTCCGGGAAGAAATACCGCGGAGTGAGACAGAGACCTTGGGGGAAATGGTCGGCGGAGATACGAGATTCTAAAATGCGCGTGCGACGGTGGTTGGGAACTTACAATACTGCTGAAGAAGCTGCTATGGAGTATGATAAAGCTGCAATTGAAATTCGTGGCGTAGACGCGGTTACGAATTTTATTCAACCGATAGGGAAGAAGATTATAAAATCCGGCGAAGAATGTTTCAGTAACAACGTTGTTTCTGCTACTTCAGTACTTAATCAGTGTTCTACTTCTTTTTCTTCAGAAGGTGGTGAATCTGTAATAGTAAAAGACAATGTTGTTCATGTTCCAAGAAATGATTCAAATGAATGTTTCTCTGTTTGGGGGAATTTGTTTGTAGAAGATGATGATAATAAGTTTAAATTTGAGTCAGTTTTTCCAAATTGTAGTGATAGTTTGTTTGATGAGTTTGGAAGAAATGATGATGTATTTGATAATGTGATGGAGTTTGAACACATGTTTTTACTCCCCGATGGTGATAATTTTAATGGAAACTTTGTTGATACTTCGAATCAGAGTTTGAATTTAGATTCAACAGATTGGAACAGAGATTATACTGATTTTCAGGATATAGAGAATTTATTTCGTTTGGATCCTGTTACTGTTGTTTCATTGATGGAGAAATAA 879 0.3811 MNNLYPKTVRILLTDNDITDDEHQPLRRVKTFLNEITIEKPNNNNISKKKTNRVKPKKSPATQRRPVIYSGKKYRGVRQRPWGKWSAEIRDSKMRVRRWLGTYNTAEEAAMEYDKAAIEIRGVDAVTNFIQPIGKKIIKSGEECFSNNVVSATSVLNQCSTSFSSEGGESVIVKDNVVHVPRNDSNECFSVWGNLFVEDDDNKFKFESVFPNCSDSLFDEFGRNDDVFDNVMEFEHMFLLPDGDNFNGNFVDTSNQSLNLDSTDWNRDYTDFQDIENLFRLDPVTVVSLMEK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05526 292 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Trre7g05526 292 MobiDBLite consensus disorder prediction 40 63 - -
Trre7g05526 292 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Trre7g05526 292 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Trre7g05526 292 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 161 - -
Trre7g05526 292 SUPERFAMILY DNA-binding domain 73 130 IPR016177 GO:0003677
Trre7g05526 292 CDD AP2 72 129 IPR001471 GO:0003700|GO:0006355
Trre7g05526 292 Gene3D AP2/ERF domain 72 131 IPR036955 GO:0003700|GO:0006355
Trre7g05526 292 Pfam AP2 domain 73 122 IPR001471 GO:0003700|GO:0006355
Trre7g05526 292 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Trre7g05526 292 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05526 Trre-Chr7 61012861 61013739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05526 7 172 AP2-EREBP Transcription Factor Family AT4G27950 43.979 2.14e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g05526 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05526 - - tpra:123917311 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03959 9 47695404 47696243 Trre7g05526 7 61012861 61013739 PCT