Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05498 ATGGACGAAACTGCTCTTGACGATATCATTCGGAAACTTGTATCGGCGAAGAACGGTAGAACGACGAAGCAAGTTCATCTTACGGAGGCTGATATTCGTCAGCTTTGTTCTTCTGCTAAAGAGATCTTTCTTAGTCAACCTAATCTTCTTGAACTTGAAGCTCCTATCAAAATTTGTGGAGATGTCCATGGCCAGTTTTCTGACCTTTTAAGGCTGTTTGAGTATGGAGGATTCCCACCCGAATCAAATTATTTGTTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTGCTCCTTGCATACAAAATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGCAACCACGAATGCGCCTCCATCAATCGCATATATGGTTTCTATGATGAGTGCAAGAGGAGGTTCAATGTTCGCCTCTGGAAGACATTTACTGATTGCTTTAACTGTTTACCGGTGGCTGCTCTAGTAGATGAGAAGATCCTTTGCATGCACGGTGGACTCTCTCCTGAACTTAAAAACTTAGATCAGATACGGAACATTGCTCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGTGACCTTCTGTGGGCTGATCCAGATAAAGATCTAGAGGGATGGGGAGAAAATGATCGAGGTGTTTCATTCACATTCGGGGCTGATAAGGTTTCTGAGTTTCTTGAGGAGCATGATCTTGATCTGATTTGTAGAGCTCACCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAACGTAAGCTGGTGACTGTATTCTCTGCACCAAATTACTGTGGTGAATTTGATAACGCTGGTGCTATGATGAGCGTAGATGACACATTGACATGCTCTTTCCAGATACTTAAGGCTTCTGATAAGAAGGGGAAAGTTGGATTTGGCAATAACTCATCAAGACCTGGAACCCCACCTCATAAGGTAAAAAAATAA 963 0.4247 MDETALDDIIRKLVSAKNGRTTKQVHLTEADIRQLCSSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGFPPESNYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVSEFLEEHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASDKKGKVGFGNNSSRPGTPPHKVKK 320
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05498 320 MobiDBLite consensus disorder prediction 301 320 - -
Trre7g05498 320 SMART pp2a_7 27 297 IPR006186 GO:0016787
Trre7g05498 320 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 299 - -
Trre7g05498 320 Gene3D - 1 306 IPR029052 -
Trre7g05498 320 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Trre7g05498 320 SUPERFAMILY Metallo-dependent phosphatases 22 298 IPR029052 -
Trre7g05498 320 FunFam Serine/threonine-protein phosphatase 1 303 - -
Trre7g05498 320 CDD MPP_PP1_PPKL 6 294 - -
Trre7g05498 320 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Trre7g05498 320 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Trre7g05498 320 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Trre7g05498 320 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Trre7g05498 320 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Trre7g05498 320 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Trre7g05498 320 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Trre7g05498 320 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Trre7g05498 320 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre7g05498 Trre-Chr7 60734572 60737041 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05498 56 240 Calmodulin-binding Proteins AT5G63870 30.000 4.45e-27 106
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05498 K06269 - cit:102611078 623.239
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05498 7 60734572 60737041 Trre7g05498 7 60734572 60737041 ECH