Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05486 ATGGGGACTAAGGAGGATAGCACAACTAAACCTTCTAAAACATCTTCAACAACTCAGGAGGTACCAACAGTACCACCACCGTATCCAGATTGGTCGCAGGCCTACTATAATCCTGGAGCCGCTCCGCCTCCCTATTATGCTTCAACTGTTGGTCCGCCAACCCCCCATCCGTATATGTGGGGAAGCCAGCATCCTTTAATGGCGCCATATGGGACTCCAGTCCCGTATCCTGCTATGTACCCTCCGGGAAATATCTATGCTCATCCTAGCATGGTAGTGACTCCAAGTGCCATGCACCAAACTACAGAGTTTGAAGGGAAGGGACCTGATGGAAAGGATAAGGATTCATCTAAAAAACCGAAGGGCACTTCTGCGAATACATGTGCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGTTTTTCACAAAGTGGTGAAAGTGGTTCAGAGGGTTCATTAAATGGTAGTGATGAGAACCAACAGGAATCAGCGAGAAACAAAAAGGGAAGTTTTGACCTCATGCTTGTTAATGGAGCAAACGTACAGAACAATAACACTGGACCCATTTCTCAATCGCCTGTTCCAGGAAATCCTGTTGTCTCAATGCCTGCTACTAATCTTAATATCGGAATGGATTTATGGAATGCATCTCCTGCTGGTGTTGAAGCCTCCAAAATGAGACACAATCAATCTAGCGCCCCTGGAGCTGGTGAACAATGGATGCAACAAGATGATCGTGAGCTGAAAAGACAGAAGAGAAAACAGTCTAATCGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGCTACAAAAGAGGGTTGAGGCATTGGGAGGTGAGAATCGAACTCTTAGAGAAGAGCTTCAGAAGCTTTCTGAGGAATGCGAGAAGCTTACATCTGAAAACAATTCTATCAAGGAAGAGTTGGAACGATTGTGTGGGCCGGAAGTAGTTGCTAACCTTGAATGA 999 0.4645 MGTKEDSTTKPSKTSSTTQEVPTVPPPYPDWSQAYYNPGAAPPPYYASTVGPPTPHPYMWGSQHPLMAPYGTPVPYPAMYPPGNIYAHPSMVVTPSAMHQTTEFEGKGPDGKDKDSSKKPKGTSANTCAKAGESGKAGSGSGNDGFSQSGESGSEGSLNGSDENQQESARNKKGSFDLMLVNGANVQNNNTGPISQSPVPGNPVVSMPATNLNIGMDLWNASPAGVEASKMRHNQSSAPGAGEQWMQQDDRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSENNSIKEELERLCGPEVVANLE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05486 332 Coils Coil 263 318 - -
Trre7g05486 332 SUPERFAMILY Leucine zipper domain 253 309 IPR046347 GO:0003700|GO:0006355
Trre7g05486 332 MobiDBLite consensus disorder prediction 140 165 - -
Trre7g05486 332 Gene3D - 253 307 - -
Trre7g05486 332 Pfam bZIP transcription factor 251 312 IPR004827 GO:0003700|GO:0006355
Trre7g05486 332 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 327 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre7g05486 332 MobiDBLite consensus disorder prediction 1 34 - -
Trre7g05486 332 FunFam BZIP transcription factor 252 303 - -
Trre7g05486 332 Pfam G-box binding protein MFMR 1 91 IPR012900 -
Trre7g05486 332 MobiDBLite consensus disorder prediction 229 243 - -
Trre7g05486 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 257 272 IPR004827 GO:0003700|GO:0006355
Trre7g05486 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 252 315 IPR004827 GO:0003700|GO:0006355
Trre7g05486 332 MobiDBLite consensus disorder prediction 1 21 - -
Trre7g05486 332 CDD bZIP_plant_GBF1 255 305 IPR045314 GO:0003700|GO:0006355
Trre7g05486 332 MobiDBLite consensus disorder prediction 101 175 - -
Trre7g05486 332 MobiDBLite consensus disorder prediction 105 120 - -
Trre7g05486 332 MobiDBLite consensus disorder prediction 227 275 - -
Trre7g05486 332 SMART brlzneu 250 314 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05486 Trre-Chr7 60637405 60639824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05486 1 332 bZIP Transcription Factor Family AT4G36730 52.819 8.33e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre7g05486 MFMR 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05486 K09060 - gmx:778191 488.419