Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05485 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGTCTTTGGTCCCCTGAAGAAGATGAAAAACTCATCACTTACATTACTACTCATGGCTATGGTTGTTGGAGTGAAGTTCCTGACAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGCAGATTGAGATGGATAAATTATTTGAGACCTGATATTAGAAGAGGAAGGTTTACACCTGATGAGGAGAAGTTAATTATTAGCCTTCACAACGTTGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTACCTGGTAGAACAGACAACGAAATAAAGAACTACTGGAATTCTTGGATCAAAAAGAAAATCAGAAAACATCATTCAGCCTCTAATTCTTCAACCACCACCAATAACATTAATACACAAAATCATGTTCTTGATTTTAGTTCCAATAATATTAAACTAGACCACTTTTCCAACCAAGATCAGAATGTAACAACAGCAAAACCAATATCATCATTTCAAGAAACAACAACCTTGTTTTCTCCCACATGTCCTTTATTTATGTTTGAACCAAATTCACTACTACATGGAAATGCAACAACAGAAGGTAATAACAATAATAATCATAATCTGCAAACAGATCAATACTTTCAAGATTCTGTTAGTTTGATCAGTTCTGAAACATGGAATCAAGTCCAATCATCAACAACTTCTTTTTCAATGGACACAATGAATATTAATTATCTACCACCTTTGATAGAGAATGTGGAGAACATGGAGGATGAAGCTGGTGGAGATCATAGAGAAGTACTAGAATCATGTTTTGATCAGAGGCAAGAGATGAATAACATTAATGATCAATGGCATCAACAATGTCCTAGTAATAATAATAATAATAACTTTGTTTTTTGGGACAATATGGTTCATGGACATGATCAACTTGGTGGGGAAGAACAACTAGCACCAAATTCATCAAATATGGGAACAAACACTATTACACTTTCTCCTTTTCCTTCTTCATCTTTTTGA 1011 0.3541 MGHHSCCNQQKVKRGLWSPEEDEKLITYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIISLHNVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKHHSASNSSTTTNNINTQNHVLDFSSNNIKLDHFSNQDQNVTTAKPISSFQETTTLFSPTCPLFMFEPNSLLHGNATTEGNNNNNHNLQTDQYFQDSVSLISSETWNQVQSSTTSFSMDTMNINYLPPLIENVENMEDEAGGDHREVLESCFDQRQEMNNINDQWHQQCPSNNNNNNFVFWDNMVHGHDQLGGEEQLAPNSSNMGTNTITLSPFPSSSF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05485 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre7g05485 336 CDD SANT 69 112 IPR001005 -
Trre7g05485 336 FunFam Transcription factor MYB26 68 138 - -
Trre7g05485 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre7g05485 336 MobiDBLite consensus disorder prediction 312 336 - -
Trre7g05485 336 MobiDBLite consensus disorder prediction 309 336 - -
Trre7g05485 336 CDD SANT 17 61 IPR001005 -
Trre7g05485 336 PANTHER MYB DOMAIN PROTEIN 55 1 297 - -
Trre7g05485 336 Gene3D - 6 66 - -
Trre7g05485 336 FunFam MYB transcription factor 6 66 - -
Trre7g05485 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre7g05485 336 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre7g05485 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre7g05485 336 Gene3D - 68 139 - -
Trre7g05485 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre7g05485 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre7g05485 336 SMART sant 66 114 IPR001005 -
Trre7g05485 336 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05485 Trre-Chr7 60624971 60626940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05485 1 312 MYB Transcription Factor Family AT1G63910 47.541 4.32e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre7g05485 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05485 K09422 K02947 gmx:100797787 377.096