Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05484 ATGATCATTTCAGAGAAGAACCGCAAAGAGATCTGCAAATACCTCTTTCAAGAGGGTGTATGTTATGCCAAGAAAGATTACAATTTGGCAAAGCACCCAGAAATCGATGTTCCTAATTTGCAGGTGATTAAGCTTATGCAGAGCTTCAAATCCAGGGAATATGTTAGGGAAACATTTGCTTGGATGCACTATTACTGGTTTCTTACAAATGATGGAATTGAGTTTCTCAGAACTTATCTTAATCTTCCTTCTGAGATTGTTCCTGCTACTTTGAAGAAACAGGCTAAGCCACCTGGTAGACCATTTGGTGGTCCACCCGGTGATCGTCCTAGGGGTCCACCAAGGTTTGAAGGAGAGCGTAGATTTGGCGGTGACCGTGATGGCTACCGTGGAGGTCCTGGTCGACCTGGTGGTGAATTTGGAGGAGAAAAGGGTGGTGCTCCTGCTGATTACAGACCCTCATTTGGGGGTCCTGGTGGAAGGCCTGGCTTTGGTCGTGGGTCTGGTGGTTTTGGGGCTGGGGCTCCATCCAGCTCAGATGCTTAA 546 0.4725 MIISEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPPGDRPRGPPRFEGERRFGGDRDGYRGGPGRPGGEFGGEKGGAPADYRPSFGGPGGRPGFGRGSGGFGAGAPSSSDA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05484 181 MobiDBLite consensus disorder prediction 112 128 - -
Trre7g05484 181 PANTHER 40S RIBOSOMAL PROTEIN S10 1 179 IPR037447 -
Trre7g05484 181 MobiDBLite consensus disorder prediction 91 181 - -
Trre7g05484 181 FunFam 40S ribosomal protein S10 1 104 - -
Trre7g05484 181 Pfam Plectin/S10 domain 3 94 IPR005326 -
Trre7g05484 181 Gene3D - 1 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05484 Trre-Chr7 60614891 60616489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05484 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 84.516 3.90e-75 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05484 K02947 - csv:101212088 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00346 9 2496864 2498469 Trre7g05484 7 60614891 60616489 PCT