Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05480 ATGGCTAGACAAGTTTGTCATGAAGATGACAAAACATCAAGTGGTGGATATTGTTACAATCCATCAATTCAAACACAAATTCAAGGTTTTGTTTCTGATCCAGAGATGTTTAATCTCACAACTGGCATGGAGATGATAGGGTTTTCAAAACATCTTCAACAACAACAACATCATAGTACTAGTAGTGACACAAACATGTGGAAAACAAATTTCATAGGAAAATTACCAAGTCAACACTCTGCAAGTTCATCAAAAACTATGAATGATTCAAATTTCTATCATCAAGATTTCACTGAACCAACAAGTAGTGATCATCAAAATCTAAACAACATGGTTCATCATCATCAGTGGCAACAACAACATGTTGATGATTCATCACTAAGATGTGTTTTTCCATGTGAAGGTAATGAAAGACCAAGTCAAGGACTTTCACTATCACTTAGTTCAACAAATCCAACATCTATTGGTTTACAATCTTTTGAACTAAGACACACTACTAATAATACTACTCAACAAGATCAAGGGTATCATGGTCATTTTCTTCTCAAAAACTCTAAGTTTTTGTTACCAGCTCAACAACTTCTCAATGAGTTTTGTAGTTTAGAAACCACAAAACAAAATGATTTAGTTTTACAAAAACAAAAATCTCAAAAGTTCAACAACAACAAACAAACTTGGGAAGATCAAGATATTAACAATGGTGGTAGTAGCAGTTCCTCAATCAAACAATCTTTAACCTCTTTAGAGTTTGTTGAATTACAAAAGAGAAAAACCAAGCTTCTTTCCATGCTAGAAGAGGTTGATAGAAGGTACAAGAACTATTGTAATCAAATGAAGAGTGTGGTTTCATCATTTGAAGCTGTAGCTGGAAATGGAGCAGCTAAAGTTTATTCAGCTTTAGCTTTAAAAGCTATGTCAAGACATTTTAGATGTTTGAAAGATGGAATATTGGAACAAATTCAAACAACTAGAAAAGCTATGGGAGAAAAAGACCCTATTGCACCTGGTACAACTAAGGGTGAAACACCTAGGCTTAAAATCCTAGATAGAGTTTTAAGACAACAAAGAGCATTTCAACAAATTAACATGATGGAAACTCATCCTTGGAGACCTCAACGCGGTCTTCCCGAACGTTCTGTTTCTATTCTTCGAGCTTGGCTTTTCGAACACTTTCTACATCCGTACCCAAGCGACGTTGATAAACATATTTTGGCCCGCCAAACCGGTCTCTCAAGAAGCCAGGTATCAAATTGGTTTATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAAGAAATGTATTTAGAAGAAGAGAAAGAGCAACAAAGAAACACAACAACTTTGGAGGGAGGAGGAGGAGGTAACAACATTAATCATGAAGATGAAAATCTTAATAATGTGCTTCAAAACCAATCTCCAACACAACCTCATGAAGATCAAAAGCCACGGCTCGTTCGAATCGATTCCGAGTGTGTGTCATCCATCATTAACAACAATCATGATCATAATAAAAATGAGACTAATAAAAATTTGAATCATCATCACCAATTAGCTGCGGACGCATTTGGATCGGTTGATATCGATTTTTCATCTTATAATACACACCATTCATCTGATCACATGGTTGCTGCTTACACAAGTAATGAGGGTTTCCACCACGGTGGTGGCGGTGGCGGAGTGTCGTTGACGTTAGGGTTACAACAACATGGTGGAAATGGAGTGAGTTTGGCTTTTCCATCAACAAGTCAGAGTCCAATGTTCTATACAAGAGAACAAATTGATGAACCGGTTCAATACTCTCTTTTGGATGGTGAAGGAACAAATATTATGCCGTATAGGAATCTCATGGGGACACAATTGTTACATGACTTGGCATGA 1881 0.3668 MARQVCHEDDKTSSGGYCYNPSIQTQIQGFVSDPEMFNLTTGMEMIGFSKHLQQQQHHSTSSDTNMWKTNFIGKLPSQHSASSSKTMNDSNFYHQDFTEPTSSDHQNLNNMVHHHQWQQQHVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPTSIGLQSFELRHTTNNTTQQDQGYHGHFLLKNSKFLLPAQQLLNEFCSLETTKQNDLVLQKQKSQKFNNNKQTWEDQDINNGGSSSSSIKQSLTSLEFVELQKRKTKLLSMLEEVDRRYKNYCNQMKSVVSSFEAVAGNGAAKVYSALALKAMSRHFRCLKDGILEQIQTTRKAMGEKDPIAPGTTKGETPRLKILDRVLRQQRAFQQINMMETHPWRPQRGLPERSVSILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQRNTTTLEGGGGGNNINHEDENLNNVLQNQSPTQPHEDQKPRLVRIDSECVSSIINNNHDHNKNETNKNLNHHHQLAADAFGSVDIDFSSYNTHHSSDHMVAAYTSNEGFHHGGGGGGVSLTLGLQQHGGNGVSLAFPSTSQSPMFYTREQIDEPVQYSLLDGEGTNIMPYRNLMGTQLLHDLA 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05480 626 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 101 461 - -
Trre7g05480 626 SMART prehox3 176 318 IPR006563 -
Trre7g05480 626 SUPERFAMILY Homeodomain-like 370 435 IPR009057 -
Trre7g05480 626 SMART HOX_1 369 433 IPR001356 GO:0003677
Trre7g05480 626 ProSiteProfiles 'Homeobox' domain profile. 366 429 IPR001356 GO:0003677
Trre7g05480 626 CDD homeodomain 369 430 IPR001356 GO:0003677
Trre7g05480 626 MobiDBLite consensus disorder prediction 446 462 - -
Trre7g05480 626 MobiDBLite consensus disorder prediction 439 462 - -
Trre7g05480 626 FunFam BEL1-like homeodomain protein 4 372 434 - -
Trre7g05480 626 Pfam Homeobox KN domain 386 425 IPR008422 GO:0003677|GO:0006355
Trre7g05480 626 Pfam Associated with HOX 182 316 IPR006563 -
Trre7g05480 626 Gene3D - 372 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05480 Trre-Chr7 60574405 60577580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05480 118 626 Homeobox Transcription Factor Family AT5G41410 45.534 6.40e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre7g05480 POX 1e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05480 - - tpra:123913365 1028.85