Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05478 ATGGGTTTTCCAGTAGGATACACAGAACTTCTCTTCCCAAAATTAGTTCTTCATCTTCTCTCCATCTTCACTTTCATAAGAAAACTCATTTGCATCATTTTTCACTATCTGGGTCTCCCTGATTTCATCGAACCCGACATTACATGGCCAGAAACTTCAACCCGAATACCCGAATTCGAATCCGTTTCAGCTCTTCTTATCCGTGAAATCTTACCGGTTGTTAAGTTTATGGATTTGGTGGACCCACCTGAAAGCTGTGCTGTGTGTCTTAACGAATTCGAGGAAAACGATGAGATCAGACGGTTAGCGAATTGTAGACACATTTTTCATCGAGGTTGTTTGGACCGTTGGATGGGTTATGATCAGAGAACGTGTCCTTTGTGTAGAACACCTTTTATACCTGATGATATGCAAAGTGCTTTTAATGAGAGATTATGGGCTGCTTCTGGTATACTTGAATTTCATTCTGATGTTCTTGCTTTGTAG 486 0.4053 MGFPVGYTELLFPKLVLHLLSIFTFIRKLICIIFHYLGLPDFIEPDITWPETSTRIPEFESVSALLIREILPVVKFMDLVDPPESCAVCLNEFEENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDMQSAFNERLWAASGILEFHSDVLAL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05478 161 SUPERFAMILY RING/U-box 71 135 - -
Trre7g05478 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Trre7g05478 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 21 148 - -
Trre7g05478 161 SMART ringv_2 85 129 IPR011016 GO:0008270
Trre7g05478 161 CDD RING-H2_RHA1-like 86 132 - -
Trre7g05478 161 SMART ring_2 86 128 IPR001841 -
Trre7g05478 161 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Trre7g05478 161 Pfam Ring finger domain 85 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05478 Trre-Chr7 60537366 60537851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05478 1 153 C3H Transcription Factor Family AT1G63840 57.595 6.57e-60 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05478 K16281 - rcu:8287413 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00352 9 2531342 2531749 Trre7g05478 7 60537366 60537851 PCT