Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05475 ATGTCTTCTGAACTCTATTCTTTTGGTACCACAACTTTCCACACACATTCAACCTCAGAACATGTCTCTACTGATGGAAGTGGAGACTTACCATCATTTTTCTCTGACTCTTTTCCTTTTTTCAACACTGAAGTTACTTCTCAACAAAATTCAAATCCATCATTATTTGATGAATCTCTTATTCCTTCTTCTCTAGACCCTTTTTCACCTTCTTTTTTCTCTTTCTCTCCTCCAACTGACATTAATAATGGAAGTTTCTCGGCTTTCGATTTGTCCGAAGTTAAAAACGAGGAATCACAAATGAGTATTGATTATTATAACAATTACAACAACAATAGTAACACTCAATTTCTTCCTCATAGTTATAGTGGTGTTGAAAATGTAACAAAGTACATGCAAAGAAGCTTCAGTAGTAACTCTTTCGAGAAGAAGCCAAATTTACTATATCAAACTGAACATGATAATCTCATTGATTCATCAAAATTTCAAAGACATGATTTAAGCTCCCCTGAAAATAATTTGAGAAGGGTTTGTAGCACAGGTGATTTGCAGAACATGAAAGCAAATAATATGTCTCCAACAGAGGGAAATTCGCAAGAGGAACAAAATTTCAAAGTAGGACGATACAGTGCGGAAGAAAGAAAAGAAAGAATTTCGAAATATAGAGCAAAGAGAACTCAGAGGAACTTTAACAAAACCATTAAGTATGCATGTAGAAAGACATTAGCAGATAATCGACCGCGCGTAAGAGGAAGGTTTGCACGCAACGATGAGCCCAACGAGATTCCTAAGGCTCCATGTTTAATCAGAGATGAAGATGAAGTCGATTTTTGGATGGAAGAATTACGATTGCATGAAGACGATGTAACAGTGGGAGCAGCACAACAATATTTGAAGAGTAATAGTTATGGAGTTAGTCAGTTTCAATATTTCGGCTTATGA 942 0.3567 MSSELYSFGTTTFHTHSTSEHVSTDGSGDLPSFFSDSFPFFNTEVTSQQNSNPSLFDESLIPSSLDPFSPSFFSFSPPTDINNGSFSAFDLSEVKNEESQMSIDYYNNYNNNSNTQFLPHSYSGVENVTKYMQRSFSSNSFEKKPNLLYQTEHDNLIDSSKFQRHDLSSPENNLRRVCSTGDLQNMKANNMSPTEGNSQEEQNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRVRGRFARNDEPNEIPKAPCLIRDEDEVDFWMEELRLHEDDVTVGAAQQYLKSNSYGVSQFQYFGL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05475 313 ProSiteProfiles CCT domain profile. 214 256 IPR010402 GO:0005515
Trre7g05475 313 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 73 278 IPR045281 GO:0009909
Trre7g05475 313 Pfam CCT motif 214 256 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05475 Trre-Chr7 60523810 60525448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05475 210 261 C2C2-CO-like Transcription Factor Family AT5G24930 50.000 6.33e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre7g05475 CCT 6.3e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05475 - - psat:127101452 432.95