Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05470 ATGAGGAAAGGCAACTCCATCGCACACACTTTCTCTTCATCTTCATCTTCCGATTCTTCCCTAACTCAATTTCACTGCTTATCAATCCTCCTCAATCTCAAGGGCAAAGAAATTAGAAGGATCGTGCATTTATATAGGTTGATGAAGGAGACTGTATTGACTGCTCCACCTGCTTACTATTATCAGTATCCAAGAGCATCTGAGGAGCATGTTCCACTATCTTCTCACCAGGGTGCTCCCTCTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAACCTAGATACTTCTAGTCCTGATACTTATAGACCACCTCCTGCTCCTCTCCCTTTCAATGTGACATCTGGTGCCACTCAGACTGCACCTGTGACTCAAGAAATTAGCTGTGATAAGAACAATACTTCCTCAATTTCGACAAATTCTAATTCAGTTCAAGAACCATCTGGAGATAATCACGGAACCTCACCTAATCCAGAAGAACCAAAGGAATCAGAATGCAAAGGTCAAACTGATTTAGAGCTAGACTCGGCAAAGGATTCTGAAATTGAACTATCAAAGTTGGGCGAGCCTATAAATTTAGAGGAAGAGGAGGATACATGCCCAATATGTTTAGAAGAATATGATGAAGAAAATCCAAAACTCACCACAAATTGTGACCATCATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAATCTTGCCCTGTCTGCGATCAGGTTATGGTTTTAACTTTTTAA 744 0.4113 MRKGNSIAHTFSSSSSSDSSLTQFHCLSILLNLKGKEIRRIVHLYRLMKETVLTAPPAYYYQYPRASEEHVPLSSHQGAPSAFSGRLLVDTNLDTSSPDTYRPPPAPLPFNVTSGATQTAPVTQEISCDKNNTSSISTNSNSVQEPSGDNHGTSPNPEEPKESECKGQTDLELDSAKDSEIELSKLGEPINLEEEEDTCPICLEEYDEENPKLTTNCDHHFHLACILEWMERSESCPVCDQVMVLTF 247
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05470 247 CDD RING-H2_AIRP1-like 195 243 - -
Trre7g05470 247 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Trre7g05470 247 FunFam Putative E3 ubiquitin-protein ligase RHB1A 176 244 - -
Trre7g05470 247 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 77 245 - -
Trre7g05470 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 244 IPR013083 -
Trre7g05470 247 MobiDBLite consensus disorder prediction 91 168 - -
Trre7g05470 247 SMART ring_2 199 239 IPR001841 -
Trre7g05470 247 SUPERFAMILY RING/U-box 193 244 - -
Trre7g05470 247 Pfam Ring finger domain 197 239 IPR001841 -
Trre7g05470 247 MobiDBLite consensus disorder prediction 111 154 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre7g05470 Trre-Chr7 60470060 60472832 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05470 57 245 C3H Transcription Factor Family AT5G41350 55.208 2.72e-57 180
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05470 - - gmx:100816369 317.775