Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g05470 | ATGAGGAAAGGCAACTCCATCGCACACACTTTCTCTTCATCTTCATCTTCCGATTCTTCCCTAACTCAATTTCACTGCTTATCAATCCTCCTCAATCTCAAGGGCAAAGAAATTAGAAGGATCGTGCATTTATATAGGTTGATGAAGGAGACTGTATTGACTGCTCCACCTGCTTACTATTATCAGTATCCAAGAGCATCTGAGGAGCATGTTCCACTATCTTCTCACCAGGGTGCTCCCTCTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAACCTAGATACTTCTAGTCCTGATACTTATAGACCACCTCCTGCTCCTCTCCCTTTCAATGTGACATCTGGTGCCACTCAGACTGCACCTGTGACTCAAGAAATTAGCTGTGATAAGAACAATACTTCCTCAATTTCGACAAATTCTAATTCAGTTCAAGAACCATCTGGAGATAATCACGGAACCTCACCTAATCCAGAAGAACCAAAGGAATCAGAATGCAAAGGTCAAACTGATTTAGAGCTAGACTCGGCAAAGGATTCTGAAATTGAACTATCAAAGTTGGGCGAGCCTATAAATTTAGAGGAAGAGGAGGATACATGCCCAATATGTTTAGAAGAATATGATGAAGAAAATCCAAAACTCACCACAAATTGTGACCATCATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAATCTTGCCCTGTCTGCGATCAGGTTATGGTTTTAACTTTTTAA | 744 | 0.4113 | MRKGNSIAHTFSSSSSSDSSLTQFHCLSILLNLKGKEIRRIVHLYRLMKETVLTAPPAYYYQYPRASEEHVPLSSHQGAPSAFSGRLLVDTNLDTSSPDTYRPPPAPLPFNVTSGATQTAPVTQEISCDKNNTSSISTNSNSVQEPSGDNHGTSPNPEEPKESECKGQTDLELDSAKDSEIELSKLGEPINLEEEEDTCPICLEEYDEENPKLTTNCDHHFHLACILEWMERSESCPVCDQVMVLTF | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g05470 | 247 | CDD | RING-H2_AIRP1-like | 195 | 243 | - | - | |
| Trre7g05470 | 247 | ProSiteProfiles | Zinc finger RING-type profile. | 199 | 240 | IPR001841 | - | |
| Trre7g05470 | 247 | FunFam | Putative E3 ubiquitin-protein ligase RHB1A | 176 | 244 | - | - | |
| Trre7g05470 | 247 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 77 | 245 | - | - | |
| Trre7g05470 | 247 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 244 | IPR013083 | - | |
| Trre7g05470 | 247 | MobiDBLite | consensus disorder prediction | 91 | 168 | - | - | |
| Trre7g05470 | 247 | SMART | ring_2 | 199 | 239 | IPR001841 | - | |
| Trre7g05470 | 247 | SUPERFAMILY | RING/U-box | 193 | 244 | - | - | |
| Trre7g05470 | 247 | Pfam | Ring finger domain | 197 | 239 | IPR001841 | - | |
| Trre7g05470 | 247 | MobiDBLite | consensus disorder prediction | 111 | 154 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g05470 | Trre-Chr7 | 60470060 | 60472832 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g05470 | 57 | 245 | C3H Transcription Factor Family | AT5G41350 | 55.208 | 2.72e-57 | 180 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g05470 | - | - | gmx:100816369 | 317.775 |