Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05469 ATGAGGAAAGGCAACTCCATCGCACACACTTTCTCTTCATCTTCATCTTCCGATTCTTCCCTAACTCAATTTCACTGCTTATCAATCCTCCTCAATCTCAAGGGCAAAGAAATTAGAAGGATCGTGCATTTATATAGGTTGATGAAGGAGACTGTATTGACTGCTCCACCTGCTTACTATTATTATCCAAGAGCATCTGAGGAGCATGTTCCACTATCTTCTCACCAGGGTGCTCCCTCTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAACCTAGATACTTCTAGTCCTGATACTTATAGACCACCTCCTGCTCCTCTCCCTTTCAATGTGACATCTGGTGCCACTCAGACTGCACCTGTGACTCAAGAAATTAGCTGTGATAAGAACAATACTTCCTCAATTTCGACAAATTCTAATTCAGTTCAAGAACCATCTGGAGATAATCACGGAACCTCACCTAATCCAGAAGAACCAAAGGAATCAGAATGCAAAGGTCAAACTGATTTAGAGCTAGACTCGGCAAAGGATTCTGAAATTGAACTATCAAAGTTGGGCGAGCCTATAAATTTAGAGGAAGAGGAGGATACATGCCCAATATGTTTAGAAGAATATGATGAAGAAAATCCAAAACTCACCACAAATTGTGACCATCATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAATCTTGCCCTGTCTGCGATCAGGTTATGGTTTTAACTTTTTAA 741 0.4103 MRKGNSIAHTFSSSSSSDSSLTQFHCLSILLNLKGKEIRRIVHLYRLMKETVLTAPPAYYYYPRASEEHVPLSSHQGAPSAFSGRLLVDTNLDTSSPDTYRPPPAPLPFNVTSGATQTAPVTQEISCDKNNTSSISTNSNSVQEPSGDNHGTSPNPEEPKESECKGQTDLELDSAKDSEIELSKLGEPINLEEEEDTCPICLEEYDEENPKLTTNCDHHFHLACILEWMERSESCPVCDQVMVLTF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05469 246 FunFam Putative E3 ubiquitin-protein ligase RHB1A 175 243 - -
Trre7g05469 246 MobiDBLite consensus disorder prediction 93 167 - -
Trre7g05469 246 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 76 244 - -
Trre7g05469 246 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Trre7g05469 246 MobiDBLite consensus disorder prediction 110 153 - -
Trre7g05469 246 CDD RING-H2_AIRP1-like 194 242 - -
Trre7g05469 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 243 IPR013083 -
Trre7g05469 246 Pfam Ring finger domain 196 238 IPR001841 -
Trre7g05469 246 SUPERFAMILY RING/U-box 192 243 - -
Trre7g05469 246 SMART ring_2 198 238 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05469 Trre-Chr7 60470060 60472832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05469 57 244 C3H Transcription Factor Family AT5G41350 55.497 4.44e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05469 - - gmx:100816369 322.783