Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05468 ATGGCAAACGGGTCTTCTCTTGATCGTCTTGAAGCTAAAACTTTTACCGAATCTCATAGAAACGGCGATTGTCTTATTGAGGATTGTGTTGATAGTGTTGGTCATGACAAAGCTAAACAAAAATCTTTGTTTTGTCAAATTTTTTCGGTTTATCTTAAAGAGAATTCTAGTAGAGGCAATGTGAAGCCTGTGCCTGTGATGCTCGGTGACGGTCAATTGCTTGATTTATACCAACTTTTCTTCCTTGTGAAGGAAAAAGGTGGGTATGATGTGGTGTCGAGGAAAGGTTTGTGGGATTCTGTGATAGTTGAATTGGGTATGGACATTCCTGTTTTGGCTTCGGTAAAATTAGTTTATGACAGATATCTGCATGGTTTCGAAGGTTGGCTCGGCAAAACTTTTGAAGAGAAGAGTTTAAAAAACGGGAACAATGGGTGTTTGAATTCATTGCCATTAGATCTGGAAAAAGAGTTTCGAAGCCTTTTATGCTCAAATCTAAAGGACAAAGATGATGATTTTGTCCCGTTAGAATCAAGCAACATCATAAAGCACATTGATTTGGTTAACCAAAAGAGTAGTGGTTATTTACTGGATTCCATAAACCTAACCAACAAATGTTTGGATGTCCAACAAGTTGATGGTGAAGGTAATGATGATGATGACGATAAATTTTTTGGTAATAGTCTTAAGGATTATCTAGCTGCCTCTCGCAAACGTAAACGGGAATCAATATCAGGAATGGTAAACTGGACGAGGCATATTGCAAAACACCCGTTTGATCCTGTAGCTCTACCATTACCAGAACCATCAAAGTGGAAGGAGTATAAAGGAGGCAAGGACCTTTTTGTTCAGCTGCTGAGGGCAAGAGACGTTCTAGCAGTGAGAAAGAATGCGGAACCAAACAGTGGATCATCTTCTCAGAAGGTGAAGATGCATCCTGCCATGTATGAGGATCCCGTTGGTCACCAGGGTACTATGAAATTGAGATGTAGTGAAAGGCTGCCTATCTCTCCTAAATCTCGCTGCACTTGCTGCAATTCTAAATCATGCTCTGCTAATGGAAATAAGTTGCATGGTTCGGTCAATATGGCTGCCAAACCAGATGGCACTGAAAAGAAAAAATCGACTTCCAAATCAAAATCGAACAAAAAGAAAAAACTTGTGCCATCTGAGGATGATTTTCGTGTAAAATATGTTTCTATAGGTCATCTTTTCCAAGCGGAAGTTCCGCAATGGACTGATGAAGTTTATGTGAGTGACCCTAAATGGTTAGGCACACAAGTATGGCCTGTTAAAGATGACTCAAAACCTAGTACCAAAACAGACCTTGTTGTGAGAGGAAGACGAGGAAAGTGTAGTTGCGACTTTCAAGGTTCTGTTGACTGTATCAGATTTCTCATTGCTGAAAACAGGATGAAACTGAAGCTTGAATTGGGTTCTGCTTTTTACCATTGGGGATTTGATAAAATGGGCGAGGAAGTTTCGCTTCGATGGACAGTTGCCGAAGAAAAGAAATTTAAGGATGCAATGAGGTTAAATATCCCCTCTCAAAACAAGTCTTTTTGGAACAATCCGTCCAAATACTTTCTTAAGAAGACAAGAAAAGACATGGTGAGCTATTACTTCAATGCATATATTATTCAACTAAGAAGCTACCAGAATCGAGTGACTCCGAAGACTGTTGACAGTGATGACGACGAAGTCGAATTTGGATCTTTTGGTGATGGTTTTGGGAGGAGCAGTATCAAGCATCCACCTATGGAATTCATGGAGTGTTCAGAGAACAGGCAATGCTGGGATTATGAGTAG 1809 0.4002 MANGSSLDRLEAKTFTESHRNGDCLIEDCVDSVGHDKAKQKSLFCQIFSVYLKENSSRGNVKPVPVMLGDGQLLDLYQLFFLVKEKGGYDVVSRKGLWDSVIVELGMDIPVLASVKLVYDRYLHGFEGWLGKTFEEKSLKNGNNGCLNSLPLDLEKEFRSLLCSNLKDKDDDFVPLESSNIIKHIDLVNQKSSGYLLDSINLTNKCLDVQQVDGEGNDDDDDKFFGNSLKDYLAASRKRKRESISGMVNWTRHIAKHPFDPVALPLPEPSKWKEYKGGKDLFVQLLRARDVLAVRKNAEPNSGSSSQKVKMHPAMYEDPVGHQGTMKLRCSERLPISPKSRCTCCNSKSCSANGNKLHGSVNMAAKPDGTEKKKSTSKSKSNKKKKLVPSEDDFRVKYVSIGHLFQAEVPQWTDEVYVSDPKWLGTQVWPVKDDSKPSTKTDLVVRGRRGKCSCDFQGSVDCIRFLIAENRMKLKLELGSAFYHWGFDKMGEEVSLRWTVAEEKKFKDAMRLNIPSQNKSFWNNPSKYFLKKTRKDMVSYYFNAYIIQLRSYQNRVTPKTVDSDDDEVEFGSFGDGFGRSSIKHPPMEFMECSENRQCWDYE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05468 602 SMART bright_3 39 132 IPR001606 GO:0003677
Trre7g05468 602 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Trre7g05468 602 SMART ARID_2 35 127 - -
Trre7g05468 602 Pfam ARID/BRIGHT DNA binding domain 56 127 IPR001606 GO:0003677
Trre7g05468 602 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 35 597 - -
Trre7g05468 602 SMART ELM2_2 399 449 IPR000949 -
Trre7g05468 602 CDD ARID 57 127 - -
Trre7g05468 602 SUPERFAMILY ARID-like 47 130 IPR036431 GO:0003677
Trre7g05468 602 MobiDBLite consensus disorder prediction 356 388 - -
Trre7g05468 602 Gene3D - 27 141 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05468 Trre-Chr7 60458741 60462785 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre7g05468 ARID 1.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05468 - - psat:127105471 795.423