Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05466 ATGGAAGACGGGTCTTCCCTTGATTGCCTTGAGGCTAAAACTTTTACCGAATCTCATGGAAACGACGATAGTCTTATTGAGGATTGTGTTGATAGTGCTGATCATGACAGAGATAAACAAAAATCTTTGTTTTGTCAAAACTTTTTGGTTTACCTTAAGGAAAATTGTACTGGAAGCAATGTGAGGCCTGTGCCTGTGATACTCGGTGACGGTCAATTGCTTGATTTATACCAACTTTTCTCCCTTGTGAAGGAAAAAGGTGGGTATGATGTGGTATCAAGAAAAGGGTTGTGGCATTCTGTGATAGTTGAACTGGGTTTGGACCTTCATGTTTTGGCTTCGGTGAAATTAATTTATTACAAATATCTGAGAGATTTCGAAGGTTGGCTCAGCAAAACCAAAAGAACAACGATGAACCAAAAGAGTGATGGTGCTTTATTGGGCACCAAAAACCTAAACAACAAATGTGAGGGTGTCCAACATGTTGGTGGTGATGATGAAAAAATCGGTAATGGTGTTAAGGGTGACCTAGCTGCCTCTTATGTGGATGTTTCTGGGGACGAATTTGATTCTCACAAACGTAAGCGGGAATCAATATCCGAAATGGTAAACTCAACAAGGCATACTGCAAAACATCCCATTGATCTTGTAGCTCAGAATGTGGAACCAAACAATGGATCATCTTCTCAGAAGGTGAAGATGCATCCTGCCATGTATGAGGATCCCGTAAAGCATGTTCCTATAGGTGAAAAGAAAAAATCGGCTGGCAAATCAAAATTGACCAAAAAGAAAAAGTCTGAGCCATCTGGGGGTGATTATCCTGTAAAGCATGTTCCTGTAGGTCCTCGTTTCCAAGCTGAAGTCCCGCAATGGACTGATGAAGTTTATGTGAGTGACCCTAAATGGTTAGGCACAGAAGTATGGTCTGTTAAAGATGACTCAAAACCTACCACCAAAACAGACCTTTTTGTGAGAGGAAGACAAAGAAAGTGTAGTTGCAACGTTCAAGGTTCTGTTGACTGCGTCAGATTTCTTATTGCTGAAAACAGGATGAAACTGAAGCTTGAATTGGGTTCTGCGTTTTACCATTGGGGATTTGATAAAATGGGCGAGGTAGTTTCGCATGAATGGACAGCTGATGAAGAAAAGAAATTTAAGGATTCAATGACGTTAAATATCCCCTCTCAAAACAAATCTTTTTGGGACAATCCATCCAAACACTTTCTTAAGAAGACAAGAAAAGACATGGTGAGCTATTACTTCAATGTATATATTATTCAACTAAGAAGTTATCAGAATCGAGTGACTCCGGAGACTGTTGACAGTGATGATGACAAAGTCGAATTCAAGGAGTGTTCAGAAAACAAGCAATGCTGCGATTATGAGTAG 1389 0.4003 MEDGSSLDCLEAKTFTESHGNDDSLIEDCVDSADHDRDKQKSLFCQNFLVYLKENCTGSNVRPVPVILGDGQLLDLYQLFSLVKEKGGYDVVSRKGLWHSVIVELGLDLHVLASVKLIYYKYLRDFEGWLSKTKRTTMNQKSDGALLGTKNLNNKCEGVQHVGGDDEKIGNGVKGDLAASYVDVSGDEFDSHKRKRESISEMVNSTRHTAKHPIDLVAQNVEPNNGSSSQKVKMHPAMYEDPVKHVPIGEKKKSAGKSKLTKKKKSEPSGGDYPVKHVPVGPRFQAEVPQWTDEVYVSDPKWLGTEVWSVKDDSKPTTKTDLFVRGRQRKCSCNVQGSVDCVRFLIAENRMKLKLELGSAFYHWGFDKMGEVVSHEWTADEEKKFKDSMTLNIPSQNKSFWDNPSKHFLKKTRKDMVSYYFNVYIIQLRSYQNRVTPETVDSDDDKVEFKECSENKQCCDYE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05466 462 CDD ARID 46 127 - -
Trre7g05466 462 Gene3D - 24 143 IPR036431 GO:0003677
Trre7g05466 462 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Trre7g05466 462 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 32 451 - -
Trre7g05466 462 SUPERFAMILY ARID-like 37 137 IPR036431 GO:0003677
Trre7g05466 462 SMART ARID_2 35 127 - -
Trre7g05466 462 SMART bright_3 39 132 IPR001606 GO:0003677
Trre7g05466 462 MobiDBLite consensus disorder prediction 241 278 - -
Trre7g05466 462 SMART ELM2_2 278 335 IPR000949 -
Trre7g05466 462 MobiDBLite consensus disorder prediction 241 271 - -
Trre7g05466 462 Pfam ARID/BRIGHT DNA binding domain 46 127 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05466 Trre-Chr7 60446850 60448837 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre7g05466 ARID 5.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05466 - - mtr:25484375 517.309