LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g05454	ATGCGAGCCTTTGGTCCAGCAGATAGTTCAAAGTCTAGTCCTAGAAGTCCAATGCGAGCATTTGGTCCAGAGCAAGTGTTAAACTCAGGATTATGGATAGGAAAGCCTTATCCAGATATAGCTTCAGGGCACTGCTCTAGTCCAGGTTCAGGCCATGATTCTAGTAATAATTCAGTTGGTGGGGATCTGTCAGCATTTAGAGCACACAACAAGTGTAGCGCCGAGTGTTCCCCAATACCTAGTCCCAGAATGACAAGCCCCGGTCCCAGTTCCAGGATACAGAGCAATAATGTCAGCCCTCTACATCCAAAATCTGGAGGTGCCGCATCAGAGTTTCCTACAAGACGTCCTGATGTCATTAAACAACAAAGTCACCGATTGCCGCTTCCTCCAATAAAAGTGACTAAATCTTGTCCATTTTCTCCGACCTATTCTGCGTCTTCAACTCCTTCTGCTCCTCGAAGCCCTGCCAGACCAGAAAATTCAACAAGCCCAGGTTCACGCTGGACAAAAGGGCAGTTGCTTGGAAGGGGAACATTTGGGCATGTTTATCTTGGTTTCAGCAGAGAAAGTGGCGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCGGATGACCCTAAATCACGAGAATGTGCGCAGCAACTTGGCCAAGAAATTGCACTGCTAAGTCAATTGCGGCATCCAAACATAGTCCAGTATTATGGGTCTGAAACGGTTGATGACAAACTTTATATTTACTTGGAGTACGTTTCTGGTGGGTCAATCTATAAATTGCTTCAAGAATACGGAAAATTAGGTGAAATTGCAATTCGGAATTACACTCGGCAAATTCTTTCAGGACTTGCATATTTGCATGCAAAGAATACTGTTCATAGGGACATCAAAGGAGCAAACATATTGGTGGACCCTAATGGACAGATAAAACTGGCAGATTTTGGGATGGCAAAGCATATAACTGGGCAGACTCTTCCATTTTCTTTTAAAGGAAGTCCTTATTGGATGGCACCTGAGGTTATAAAAAATTCAGACGGTTGTAATCTTGCTGTTGATATATGGAGTTTGGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGGGCCAGTATGAAGGGGTTGCTGCTATGTTTAAGATCGGGAACAGCAGAGAACTTCCTACAATTCCAGATCATCTATCAGAAGAAGGGAAAGATTTTGTCAGGCTTTGTTTGCAAAGGGAACCACTTGATCGCCCTTCGGCTGATCAACTTCTAGATCACCCATTTGTTAAAAATGCTTCGCTGGAAAGATTCATTCTGAATGCTGATCCTTCAGAATCCCCATCTTCAGTAATAAATGCAATGAGATCTCTGGCCATTGGACCGTCTAAACATAATGTATGTTTAGACTTGGAAGCAGCTGGTATCCCTGGTATCCCTCCGACTAGAAGCTTCAGAGTTGGTTATGGATCAAGCAATGCTCATAAACCACCAAGGATCGTCTCATGTCCCGTTTCTCCATCTTTGGGGCTACGTTTGCCTTCTAGATCAACGAATTCGAGTGGAATGATATCTCCCTCTCAAACATCTAGTTCTCATAATGCATCTGGACCATCTACCCCGCAAACCTGTAGAAGTGGGACAATCCCATATCAACAAAGAAAGCAACCTATATTTCCACAAGAAGATCTGGGTATGATTCCAAAATCTCCTAATGGTTTTCAGTCAAATGGAAGCACTGCTTATCAAGGTCCAAAGCATGGTCAGATTCAGAGAAAATCTCCAGCTAGACATGCTTGCCGCCGGGATTTAATTTCACCTGAAAATGATTCTCTTGCAAACCATAATAGGAGGGCCGTTGAAGGAGTCCCAAGAGAATTTCGTAGTGGGAAGTCTAGTTTACCTGAGGTTGATTGTACGTCTCAACAACAGCGGGAGAGGGACAATGCTCAGTCAAATGCATTCATAGATCATAAGTCTAGTGCACCAGTGGTTGGGAGAGGGACAATGCGCAACCGAATGCATTCATAG	2016	0.4395	MRAFGPADSSKSSPRSPMRAFGPEQVLNSGLWIGKPYPDIASGHCSSPGSGHDSSNNSVGGDLSAFRAHNKCSAECSPIPSPRMTSPGPSSRIQSNNVSPLHPKSGGAASEFPTRRPDVIKQQSHRLPLPPIKVTKSCPFSPTYSASSTPSAPRSPARPENSTSPGSRWTKGQLLGRGTFGHVYLGFSRESGEMCAMKEVTLFSDDPKSRECAQQLGQEIALLSQLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQEYGKLGEIAIRNYTRQILSGLAYLHAKNTVHRDIKGANILVDPNGQIKLADFGMAKHITGQTLPFSFKGSPYWMAPEVIKNSDGCNLAVDIWSLGCTVLEMATTKPPWGQYEGVAAMFKIGNSRELPTIPDHLSEEGKDFVRLCLQREPLDRPSADQLLDHPFVKNASLERFILNADPSESPSSVINAMRSLAIGPSKHNVCLDLEAAGIPGIPPTRSFRVGYGSSNAHKPPRIVSCPVSPSLGLRLPSRSTNSSGMISPSQTSSSHNASGPSTPQTCRSGTIPYQQRKQPIFPQEDLGMIPKSPNGFQSNGSTAYQGPKHGQIQRKSPARHACRRDLISPENDSLANHNRRAVEGVPREFRSGKSSLPEVDCTSQQQRERDNAQSNAFIDHKSSAPVVGRGTMRNRMHS	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g05454	671	ProSitePatterns	Protein kinases ATP-binding region signature.	175	198	IPR017441	GO:0005524
	Trre7g05454	671	SUPERFAMILY	Protein kinase-like (PK-like)	167	527	IPR011009	-
	Trre7g05454	671	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	48	434	-	-
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	47	63	-	-
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	565	582	-	-
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	557	648	-	-
	Trre7g05454	671	ProSiteProfiles	Protein kinase domain profile.	169	425	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre7g05454	671	Pfam	Protein kinase domain	170	425	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	42	173	-	-
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	629	648	-	-
	Trre7g05454	671	SMART	serkin_6	169	425	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre7g05454	671	CDD	STKc_MEKK1_plant	168	425	-	-
	Trre7g05454	671	FunFam	Mitogen-activated protein kinase kinase kinase	167	449	-	-
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	86	103	-	-
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	1	22	-	-
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	506	543	-	-
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	484	543	-	-
	Trre7g05454	671	Gene3D	Transferase(Phosphotransferase) domain 1	167	449	-	-
	Trre7g05454	671	MobiDBLite	consensus disorder prediction	138	170	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g05454	Trre-Chr7	60378269	60381931	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g05454	21	551	MAP Kinase Kinase Kinase	AT1G63700	67.598	0.0	713

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Trre7g05454		Pkinase	2.6e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g05454	K20717		-	gmx:100777350	832.402