LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g05453	ATGCGAGCCTTTGGTCCAGCAGATAGTTCAAAGTCTAGTCCTAGAAGTCCAATGCGAGCATTTGGTCCAGAGCAAGTGTTAAACTCAGGATTATGGATAGGAAAGCCTTATCCAGATATAGCTTCAGGGCACTGCTCTAGTCCAGGTTCAGGCCATGATTCTAGTAATAATTCAGTTGGTGGGGATCTGTCAGCATTTAGAGCACACAACAAGTGTAGCGCCGAGTGTTCCCCAATACCTAGTCCCAGAATGACAAGCCCCGGTCCCAGTTCCAGGATACAGAGCAATAATGTCAGCCCTCTACATCCAAAATCTGGAGGTGCCGCATCAGAGTTTCCTACAAGACGTCCTGATGTCATTAAACAACAAAGTCACCGATTGCCGCTTCCTCCAATAAAAGTGACTAAATCTTGTCCATTTTCTCCGACCTATTCTGCGTCTTCAACTCCTTCTGCTCCTCGAAGCCCTGCCAGACCAGAAAATTCAACAAGCCCAGGTTCACGCTGGACAAAAGGGCAGTTGCTTGGAAGGGGAACATTTGGGCATGTTTATCTTGGTTTCAGCAGAGAAAGTGGCGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCGGATGACCCTAAATCACGAGAATGTGCGCAGCAACTTGGCCAAGAAATTGCACTGCTAAGTCAATTGCGGCATCCAAACATAGTCCAGTATTATGGGTCTGAAACGGTTGATGACAAACTTTATATTTACTTGGAGTACGTTTCTGGTGGGTCAATCTATAAATTGCTTCAAGAATACGGAAAATTAGGTGAAATTGCAATTCGGAATTACACTCGGCAAATTCTTTCAGGACTTGCATATTTGCATGCAAAGAATACTGTTCATAGGGACATCAAAGGAGCAAACATATTGGTGGACCCTAATGGACAGATAAAACTGGCAGATTTTGGGATGGCAAAGCATATAACTGGGCAGACTCTTCCATTTTCTTTTAAAGGAAGTCCTTATTGGATGGCACCTGAGGTTATAAAAAATTCAGACGGTTGTAATCTTGCTGTTGATATATGGAGTTTGGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGGGCCAGTATGAAGGGATCGGGAACAGCAGAGAACTTCCTACAATTCCAGATCATCTATCAGAAGAAGGGAAAGATTTTGTCAGGCTTTGTTTGCAAAGGGAACCACTTGATCGCCCTTCGGCTGATCAACTTCTAGATCACCCATTTGTTAAAAATGCTTCGCTGGAAAGATTCATTCTGAATGCTGATCCTTCAGAATCCCCATCTTCAGTAATAAATGCAATGAGATCTCTGGCCATTGGACCGTCTAAACATAATGTATGTTTAGACTTGGAAGCAGCTGGTATCCCTGGTATCCCTCCGACTAGAAGCTTCAGAGTTGGTTATGGATCAAGCAATGCTCATAAACCACCAAGGATCGTCTCATGTCCCGTTTCTCCATCTTTGGGGCTACGTTTGCCTTCTAGATCAACGAATTCGAGTGGAATGATATCTCCCTCTCAAACATCTAGTTCTCATAATGCATCTGGACCATCTACCCCGCAAACCTGTAGAAGTGGGACAATCCCATATCAACAAAGAAAGCAACCTATATTTCCACAAGAAGATCTGGGTATGATTCCAAAATCTCCTAATGGTTTTCAGTCAAATGGAAGCACTGCTTATCAAGGTCCAAAGCATGGTCAGATTCAGAGAAAATCTCCAGCTAGACATGCTTGCCGCCGGGATTTAATTTCACCTGAAAATGATTCTCTTGCAAACCATAATAGGAGGGCCGTTGAAGGAGTCCCAAGAGAATTTCGTAGTGGGAAGTCTAGTTTACCTGAGGTTGATTGTACGTCTCAACAACAGCGGGAGAGGGACAATGCTCAGTCAAATGCATTCATAGATCATAAGTCTAGTGCACCAGTGGTTGGGAGAGGGACAATGCGCAACCGAATGCATTCATAG	1998	0.4399	MRAFGPADSSKSSPRSPMRAFGPEQVLNSGLWIGKPYPDIASGHCSSPGSGHDSSNNSVGGDLSAFRAHNKCSAECSPIPSPRMTSPGPSSRIQSNNVSPLHPKSGGAASEFPTRRPDVIKQQSHRLPLPPIKVTKSCPFSPTYSASSTPSAPRSPARPENSTSPGSRWTKGQLLGRGTFGHVYLGFSRESGEMCAMKEVTLFSDDPKSRECAQQLGQEIALLSQLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQEYGKLGEIAIRNYTRQILSGLAYLHAKNTVHRDIKGANILVDPNGQIKLADFGMAKHITGQTLPFSFKGSPYWMAPEVIKNSDGCNLAVDIWSLGCTVLEMATTKPPWGQYEGIGNSRELPTIPDHLSEEGKDFVRLCLQREPLDRPSADQLLDHPFVKNASLERFILNADPSESPSSVINAMRSLAIGPSKHNVCLDLEAAGIPGIPPTRSFRVGYGSSNAHKPPRIVSCPVSPSLGLRLPSRSTNSSGMISPSQTSSSHNASGPSTPQTCRSGTIPYQQRKQPIFPQEDLGMIPKSPNGFQSNGSTAYQGPKHGQIQRKSPARHACRRDLISPENDSLANHNRRAVEGVPREFRSGKSSLPEVDCTSQQQRERDNAQSNAFIDHKSSAPVVGRGTMRNRMHS	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g05453	665	ProSitePatterns	Protein kinases ATP-binding region signature.	175	198	IPR017441	GO:0005524
	Trre7g05453	665	ProSiteProfiles	Protein kinase domain profile.	169	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	47	63	-	-
	Trre7g05453	665	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	48	427	-	-
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	500	537	-	-
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	478	537	-	-
	Trre7g05453	665	CDD	STKc_MEKK1_plant	168	419	-	-
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	623	642	-	-
	Trre7g05453	665	FunFam	Mitogen-activated protein kinase kinase kinase	167	443	-	-
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	42	173	-	-
	Trre7g05453	665	SUPERFAMILY	Protein kinase-like (PK-like)	167	521	IPR011009	-
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	559	576	-	-
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	551	642	-	-
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	86	103	-	-
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	1	22	-	-
	Trre7g05453	665	SMART	serkin_6	169	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre7g05453	665	MobiDBLite	consensus disorder prediction	138	170	-	-
	Trre7g05453	665	Pfam	Protein kinase domain	170	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre7g05453	665	Gene3D	Transferase(Phosphotransferase) domain 1	167	443	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g05453	Trre-Chr7	60378269	60381931	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g05453	21	545	MAP Kinase Kinase Kinase	AT1G63700	66.667	0.0	696

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Trre7g05453		Pkinase	9.8e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g05453	K20717		-	gmx:100777350	815.068