Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05445 ATGAAGGAACAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGTTATATAATTTTCTGGTCTGAATCTCCTCACCAAACTGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGAAATTAAGACAAGGAAAACAAATCAAGAAGTGGAACTTAGTTCTGATGAAATAGGCTTGCAGAGAAGTGAGCAACTGAGAGAGCTTTTTAGGACCCTCAAACCTACAGAAACAAGTCCTCCAATAAAAAAGCCTTCTGCAGCACTTTCACCTGATGACCTCACAGATACTGAATGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCAAACGACGAACCAATTTGGCTTATGGATGCGGATTCTGTTGATTGCAAAGAGTTTAATCGCTCTCTCCTCGCAAAGAGTGCATCTATTCAGACAGTGGTGTGCTTTCCTTTTATGAAAGGGGTTATTGAGCTAGGCACAACTGATATGGTAATGGAAGATCTCAGTATCATTCAACAGGTCAAAACTTCTTTATCGAATATTCTAAGTGTCGATGATCATATTAACGTTCAAGCTACATTGAATTTGAGAAATAATGAAGATGTTGCCGATGTAGAATTTGATCATATTGATTACAATGTTGAATTAATTCCAGAAGTTGGTTATGACATAATCAACACAGAAACCTCTCCTAATGGAAGTTCAAATGCCTTACAAACCAATCAACTGCCACCAGATGAAACATTCATGGTTGAAAGTTGGCAAATCATGGATGATGATTTGATCCATAACTCCATGAATTCAAGTGATTGCATATCACAAACTATTGCTTCTGTTCCTAGAAGTGGAGAAGATTGCAACAATAACCAAAAAATGACCTTAGTGGATCCACTAAGATATGATTGCCATTATCAGAAAATTCTTTCAGACCTATTGACAAACAATGACCAAATAACAACTATCGGAATGCATTTTCAAAACTTTCATCAAGATTCAAGCTTTTGTGCTTGGAACAAAAGAGTGTCAGTGGATTGCCAAAGGCCAAGACAAGGAAACTCACAAAAGCTATTGAAGAAGATGTTGTTAGAAGTTCCGCGGATGCACATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAGGGAACAAGACTAGAAGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTTAATGAAAGGTTTTTAACTCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATATCTTAGCAAGCTTGAGAAAAAGATAAAAGAGTTGGAAGCTCAAAAAGAGCCAATAGATATAGAGTCTAGAAGTAAAAAATCACATCATGATTTGTTGGAGAGGACTTGTGATGATTATTATAACAACAAAACTAACAATGGCAAGAAACCAATGATGAAGAAGAGGAAAATATGTGACATAGGTGAGACAAGGAGACAGATAGTTTCTGATGCTTTAAAAGGAAGTTCTAATAGTGATGTTACTGTCAGTATGAGTGAAAATGGAGTTGTGATTGAAATGAAGTGTCCTTCTAGAGAAGGAAGGATATTGGAAATTATGGATGCAGTTAATAATCTCAACATGGATTTTAATTCAGTTCAATCTACAGATTCTGATGGGAGGCTTCATGTGATCATTAGATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAACAAGCCCTACAAAAAGTGGCTTCAAAGTTTTGA 1800 0.3683 MKEQLALAVRSIQWSYIIFWSESPHQTGVLSWGEGYYNGEIKTRKTNQEVELSSDEIGLQRSEQLRELFRTLKPTETSPPIKKPSAALSPDDLTDTEWYYLVCMSFVFNIGQGLPGRALANDEPIWLMDADSVDCKEFNRSLLAKSASIQTVVCFPFMKGVIELGTTDMVMEDLSIIQQVKTSLSNILSVDDHINVQATLNLRNNEDVADVEFDHIDYNVELIPEVGYDIINTETSPNGSSNALQTNQLPPDETFMVESWQIMDDDLIHNSMNSSDCISQTIASVPRSGEDCNNNQKMTLVDPLRYDCHYQKILSDLLTNNDQITTIGMHFQNFHQDSSFCAWNKRVSVDCQRPRQGNSQKLLKKMLLEVPRMHMDGLVESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLSKLEKKIKELEAQKEPIDIESRSKKSHHDLLERTCDDYYNNKTNNGKKPMMKKRKICDIGETRRQIVSDALKGSSNSDVTVSMSENGVVIEMKCPSREGRILEIMDAVNNLNMDFNSVQSTDSDGRLHVIIRSKFKGPANATTKRIKQALQKVASKF 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05445 599 Pfam Helix-loop-helix DNA-binding domain 400 446 IPR011598 GO:0046983
Trre7g05445 599 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 460 IPR036638 GO:0046983
Trre7g05445 599 Gene3D - 397 472 IPR036638 GO:0046983
Trre7g05445 599 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 396 445 IPR011598 GO:0046983
Trre7g05445 599 SMART finulus 402 451 IPR011598 GO:0046983
Trre7g05445 599 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 182 IPR025610 -
Trre7g05445 599 PANTHER TRANSCRIPTION FACTOR TT8 2 597 - -
Trre7g05445 599 Coils Coil 435 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05445 Trre-Chr7 60334202 60338083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05445 1 596 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 41.807 1.73e-151 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g05445 bHLH-MYC_N 8.1e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05445 - - mtr:25502049 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05445 7 60334202 60338083 Trre7g05445 7 60334202 60338083 ECH