Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05444 ATGGTGCAAGAAAACATCATGAAGGAACAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGTTATATAATTTTCTGGTCTGAATCTCCTCACCAAACTGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGAAATTAAGACAAGGAAAACAAATCAAGAAGTGGAACTTAGTTCTGATGAAATAGGCTTGCAGAGAAGTGAGCAACTGAGAGAGCTTTTTAGGACCCTCAAACCTACAGAAACAAGTCCTCCAATAAAAAAGCCTTCTGCAGCACTTTCACCTGATGACCTCACAGATACTGAATGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCAAACGACGAACCAATTTGGCTTATGGATGCGGATTCTGTTGATTGCAAAGAGTTTAATCGCTCTCTCCTCGCAAAGACAGTGGTGTGCTTTCCTTTTATGAAAGGGGTTATTGAGCTAGGCACAACTGATATGGTAATGGAAGATCTCAGTATCATTCAACAGGTCAAAACTTCTTTATCGAATATTCTAAGTGTCGATGATCATATTAACGTTCAAGCTACATTGAATTTGAGAAATAATGAAGATGTTGCCGATGTAGAATTTGATCATATTGATTACAATGTTGAATTAATTCCAGAAGTTGGTTATGACATAATCAACACAGAAACCTCTCCTAATGGAAGTTCAAATGCCTTACAAACCAATCAACTGCCACCAGATGAAACATTCATGGTTGAAAGTTGGCAAATCATGGATGATGATTTGATCCATAACTCCATGAATTCAAGTGATTGCATATCACAAACTATTGCTTCTGTTCCTAGAAGTGGAGAAGATTGCAACAATAACCAAAAAATGACCTTAGTGGATCCACTAAGATATGATTGCCATTATCAGAAAATTCTTTCAGACCTATTGACAAACAATGACCAAATAACAACTATCGGAATGCATTTTCAAAACTTTCATCAAGATTCAAGCTTTTGTGCTTGGAACAAAAGAGTGTCAGTGGATTGCCAAAGGCCAAGACAAGGAAACTCACAAAAGCTATTGAAGAAGATGTTGTTAGAAGTTCCGCGGATGCACATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAGGGAACAAGACTAGAAGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTTAATGAAAGGTTTTTAACTCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATATCTTAGCAAGCTTGAGAAAAAGATAAAAGAGTTGGAAGCTCAAAAAGAGCCAATAGATATAGAGTCTAGAAGTAAAAAATCACATCATGATTTGTTGGAGAGGACTTGTGATGATTATTATAACAACAAAACTAACAATGGCAAGAAACCAATGATGAAGAAGAGGAAAATATGTGACATAGGTGAGACAAGGAGACAGATAGTTTCTGATGCTTTAAAAGGAAGTTCTAATAGTGATGTTACTGTCAGTATGAGTGAAAATGGAGTTGTGATTGAAATGAAGTGTCCTTCTAGAGAAGGAAGGATATTGGAAATTATGGATGCAGTTAATAATCTCAACATGGATTTTAATTCAGTTCAATCTACAGATTCTGATGGGAGGCTTCATGTGATCATTAGATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAACAAGCCCTACAAAAAGTGGCTTCAAAGTTTTGA 1803 0.3683 MVQENIMKEQLALAVRSIQWSYIIFWSESPHQTGVLSWGEGYYNGEIKTRKTNQEVELSSDEIGLQRSEQLRELFRTLKPTETSPPIKKPSAALSPDDLTDTEWYYLVCMSFVFNIGQGLPGRALANDEPIWLMDADSVDCKEFNRSLLAKTVVCFPFMKGVIELGTTDMVMEDLSIIQQVKTSLSNILSVDDHINVQATLNLRNNEDVADVEFDHIDYNVELIPEVGYDIINTETSPNGSSNALQTNQLPPDETFMVESWQIMDDDLIHNSMNSSDCISQTIASVPRSGEDCNNNQKMTLVDPLRYDCHYQKILSDLLTNNDQITTIGMHFQNFHQDSSFCAWNKRVSVDCQRPRQGNSQKLLKKMLLEVPRMHMDGLVESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLSKLEKKIKELEAQKEPIDIESRSKKSHHDLLERTCDDYYNNKTNNGKKPMMKKRKICDIGETRRQIVSDALKGSSNSDVTVSMSENGVVIEMKCPSREGRILEIMDAVNNLNMDFNSVQSTDSDGRLHVIIRSKFKGPANATTKRIKQALQKVASKF 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05444 600 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 400 461 IPR036638 GO:0046983
Trre7g05444 600 Coils Coil 436 463 - -
Trre7g05444 600 PANTHER TRANSCRIPTION FACTOR TT8 3 598 - -
Trre7g05444 600 Pfam Helix-loop-helix DNA-binding domain 401 447 IPR011598 GO:0046983
Trre7g05444 600 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 183 IPR025610 -
Trre7g05444 600 SMART finulus 403 452 IPR011598 GO:0046983
Trre7g05444 600 Gene3D - 398 473 IPR036638 GO:0046983
Trre7g05444 600 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 397 446 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05444 Trre-Chr7 60334184 60338083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05444 2 597 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 41.641 3.00e-147 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g05444 bHLH-MYC_N 2.9e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05444 - - mtr:25502049 753.821