Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05439 ATGTCTGGATGCAATAAATCACCTAAAAATGATCAACATTCGATTAAATATCCGTGGATTCAACACGGAGGGGAATCGTCTAAGGATGATATTTCTTGTGTAGATTGTTCGCCTCCTCAACTGAATCCTCCTGAGATACTGACCACGCCGCAGCTCATCTCTGCAATAGGCCAGTTATGGGTTTCTGCTAGTCGTCCACTTTCATTTTTACTTCCGAAGGAAAATATGGATAAAGATAATAAAGGATTCTCAAAAGAGAAAATTCTGGGTAACATTCATGAGAATAAAAATGGTGTCGTTACTTCAAATAACACTAATTACTATTCTGTTAATCCGGGTGCTACTTGCTTCGGTTCACAAATTGTGCAGGAAAAGTTGGATTTCCCTAAGGTAACACAGAAGATGTTAATACTTGAATCTTCTTATGGAAGTCAAGATTATATACATTCTTTATTCCATAGGTTTTCGCAGGCAAGCGATCAAAATTCAAATGAATATTGTGATAAACTGGAACTTGGGAGTGAAGAAATTTCGTTTAGATCAGGAAATGTTCCTAGTGAGCTAAACTGTCATGCAAAGGTTACTGAGCCTGAGAACCTGAAAACTAATTCTTTGGTTGCCAGGGACTGCATTTCAATAGACGCAATCCCCACTTCATTGGCTAATGAAAGAGATGTATGCAATCCTGATGTACTCATACGTGAAGCTCCAGCATTATCTAATGATGCAGTTTTGAACACAAAAGAAGTTAACCCTCTGTGTTCGGACTATTTTCTTCAAGTTGTGCCTGATAATCAGATGGATGTTGATGCTTGTCAGACCCTTTCTTCTAGTATCTATGCAGACTATCATATTATCAACTCTTTAGCTACCTGTAACACTGCTAACACTGCTTCTGTGCAGTGCCAATGTAAGATTGATGATAATGAAAGTGAATTAATGGAAATTCAAAGAAGCCATTTATCCGATATAACCGATGATGAACCTAAGCTTCAGATATTCTCTGCAACTAATCGGAAGCCTTACCATTCCCTAGCCAAGCAAGAACATGCTTTTTCTGGGGCATTGGCTGGAATATGTGTCAGCTGTTGTCTGCATCCTGTTGACACAATCAAGACAGTCGTTCAATCATGTCGTGCAGAACAGAGGTCCATCTTTTACATTGGCAAATCAATTGTTTCTGATAGAGGTTTTCCTGGACTATATCGTGGAATCACTACAAACATTGCATGTTCAGCTCCAATTTCTGCAGTTTATACTTTCACGTATGAATCGGTTAAAGCAGCTTTGCTTCCTTATCTTCCAAAGGAGAATTATTCTTTTGCCCATTGTGTGGGAGGTGGTTGTGCAAGCATTGCCACGTCTTTCATCTTCACTCCTAGTGAGCGAATAAAGCAGCAGATGCAAGTTGGATCTCATTATCGCAACTGCTGGGATGTATTGATCGGAATTATCAGAAATGGTGGTCTTTCCTCGCTATATGCAGGTTGGAGAGCTGTACTATGCCGAAATATCCCACATTCAATGATCAAGTTTTACACATATGAAAGCTTGAAGCAAGTGATGCCATCTTCTAGTATTCAATCCCACACATTTCAGACTTTAGTGTGTGGAGGATTAGCTGGATCGACTGCTGCTTTATTCACGACTCCGTTTGATGTGATCAAGACAAGATTACAGACACAGATTCCTGGATCAAGAAATCAATATGATAGTGTGTTCCATGCCCTTTACAAAATTAGCAAGACCGAAGGTTTGAAGGGCTTATGCAGGGGGTTGACTCCAAGGTTGATTATGTACATGTCTCAAGGATCATTGTTCTTTGCTTCATACGAATTTTTCAAGAGTGTATTTTCTCTGGAAGCATCCCTTCCCACTGGTTTATAA 1887 0.3953 MSGCNKSPKNDQHSIKYPWIQHGGESSKDDISCVDCSPPQLNPPEILTTPQLISAIGQLWVSASRPLSFLLPKENMDKDNKGFSKEKILGNIHENKNGVVTSNNTNYYSVNPGATCFGSQIVQEKLDFPKVTQKMLILESSYGSQDYIHSLFHRFSQASDQNSNEYCDKLELGSEEISFRSGNVPSELNCHAKVTEPENLKTNSLVARDCISIDAIPTSLANERDVCNPDVLIREAPALSNDAVLNTKEVNPLCSDYFLQVVPDNQMDVDACQTLSSSIYADYHIINSLATCNTANTASVQCQCKIDDNESELMEIQRSHLSDITDDEPKLQIFSATNRKPYHSLAKQEHAFSGALAGICVSCCLHPVDTIKTVVQSCRAEQRSIFYIGKSIVSDRGFPGLYRGITTNIACSAPISAVYTFTYESVKAALLPYLPKENYSFAHCVGGGCASIATSFIFTPSERIKQQMQVGSHYRNCWDVLIGIIRNGGLSSLYAGWRAVLCRNIPHSMIKFYTYESLKQVMPSSSIQSHTFQTLVCGGLAGSTAALFTTPFDVIKTRLQTQIPGSRNQYDSVFHALYKISKTEGLKGLCRGLTPRLIMYMSQGSLFFASYEFFKSVFSLEASLPTGL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05439 628 ProSiteProfiles Solute carrier (Solcar) repeat profile. 529 617 IPR018108 -
Trre7g05439 628 Pfam Mitochondrial carrier protein 530 619 IPR018108 -
Trre7g05439 628 Pfam Mitochondrial carrier protein 349 430 IPR018108 -
Trre7g05439 628 Pfam Mitochondrial carrier protein 440 523 IPR018108 -
Trre7g05439 628 FunFam Mitochondrial substrate carrier protein-like 324 471 - -
Trre7g05439 628 FunFam Mitochondrial substrate carrier protein-like 472 628 - -
Trre7g05439 628 ProSiteProfiles Solute carrier (Solcar) repeat profile. 345 429 IPR018108 -
Trre7g05439 628 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 326 621 - -
Trre7g05439 628 Gene3D Mitochondrial carrier domain 327 438 IPR023395 -
Trre7g05439 628 Gene3D Mitochondrial carrier domain 439 627 IPR023395 -
Trre7g05439 628 ProSiteProfiles Solute carrier (Solcar) repeat profile. 438 521 IPR018108 -
Trre7g05439 628 SUPERFAMILY Mitochondrial carrier 349 614 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05439 Trre-Chr7 60309844 60313167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05439 328 618 Chloroplast and Mitochondria Gene Families AT1G07030 33.660 1.71e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05439 - - gmx:100812271 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05439 7 60309844 60313167 Trre7g05439 7 60309844 60313167 ECH