Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05430 ATGGATAGTAGAGAGGCTATGTCATTCTCTGGTGTCCCTGGTTCATATTACATGCATAGAGGAGGGGTTGATGTTGCAGGTTCTGGTGGTTCTGGAGGGTTCCAAGTACCTCCTGGATTCAGAGCTATGCCAAACACTGGCATTATAGCTCAGCAAAATGTTAGGGGTCAAGGTGGTAATGTTGACTCTAGTTCAACATTTTCATTGGAGACTCAGTCTCATCACTCTCATGCCAATTTTAATCATGGCATTAATATTGGTGCATCTTCTGGGGTACCTTCTAGTGAGCCTGTGAAAAAGAAAAGAGGGAGACCGCGGAAATACGGTCCTGATGGAACAGTTTCTTTGAAACTGTCTCCAATGTCTGCCCCTGCTAATTCTACTCAGGGTTCATCCACACCTTCTGAGAAACGGGGTAGAGGCCGCCCTCGTGGATCTGGAAGGAAGCAACAGCTAGCTACATTAGGTGACTGGATGACCAGTTCAGCAGGGTTGGCTTTCTCGCCTCATGTTATCACCATTGGAGCTGGGGAGGACATTGCAGCAAAGCTATTGTCGTTATCACAGCAGAGACCAAGGGCTCTGTGCATCTTGTCGGGCACTGGGATAGTTTCTTCAGTTACTCTGCGACAACCTGCCTCTACCAATGCCGGTGTATCTTATGAGGGAAAATTCCAAATATTAAGCTTGTCTGGTTCTTATTTGGTTGCTGAAGATGGTGGACCATCCACTAGAACGGGTGGCATAAGTGTTTCTCTTTCTAGCCGTGATGGTCATGTTATTGGTGGCGGTGTTGCTGCTCTTATTGCTGGTAGCCCAATACAGGTGGTGGTGTGCAGTTTTGTATACGGTGGTAGCTCAAAGATAAAGACTATTAAGCAAGGAGATGCTACCACCAATGGTGAAAGTTCAGAGGCTCACAATGATAAGCTAGCTTCTCCGACCAGTGCTCCACCTAGCCAAAACTACATCTCTTCTCCAACAGGCATGTGGCCCAGACCACAGCCATCAGACGTGAAAAGCGCGCACACACATACTGGCTTCGACTTGACAAGAGGATGA 1062 0.4746 MDSREAMSFSGVPGSYYMHRGGVDVAGSGGSGGFQVPPGFRAMPNTGIIAQQNVRGQGGNVDSSSTFSLETQSHHSHANFNHGINIGASSGVPSSEPVKKKRGRPRKYGPDGTVSLKLSPMSAPANSTQGSSTPSEKRGRGRPRGSGRKQQLATLGDWMTSSAGLAFSPHVITIGAGEDIAAKLLSLSQQRPRALCILSGTGIVSSVTLRQPASTNAGVSYEGKFQILSLSGSYLVAEDGGPSTRTGGISVSLSSRDGHVIGGGVAALIAGSPIQVVVCSFVYGGSSKIKTIKQGDATTNGESSEAHNDKLASPTSAPPSQNYISSPTGMWPRPQPSDVKSAHTHTGFDLTRG 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05430 353 MobiDBLite consensus disorder prediction 55 151 - -
Trre7g05430 353 MobiDBLite consensus disorder prediction 119 136 - -
Trre7g05430 353 MobiDBLite consensus disorder prediction 55 92 - -
Trre7g05430 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 282 IPR005175 -
Trre7g05430 353 Gene3D - 169 295 - -
Trre7g05430 353 ProSiteProfiles PPC domain profile profile. 161 302 IPR005175 -
Trre7g05430 353 CDD DUF296 169 281 IPR005175 -
Trre7g05430 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 283 - -
Trre7g05430 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 319 IPR039605 GO:0003680
Trre7g05430 353 MobiDBLite consensus disorder prediction 294 332 - -
Trre7g05430 353 MobiDBLite consensus disorder prediction 294 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05430 Trre-Chr7 60239953 60243090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05430 1 353 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 45.780 3.57e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05430 - - gmx:100813888 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05430 7 60239953 60243090 Trre7g05430 7 60239953 60243090 ECH
Trre9g00366 9 2621589 2624561 Trre7g05430 7 60239953 60243090 PCT