Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05406 ATGACAAGTGATTATTCTACAACATCGTACATGGATCAGCTGGTGACCCAAAGTAATGTTGAAAAGCCAATGTGGTTTGATGCTTTTCTGAAAGAAAATTTCTTTGAATCATGTTCTACTCACCCGTTGCGCAAGAATGAGTTAAATAAGTATTGTATAGACTGCAATATGTTAATCTGTCAACATTGTGTATCTTCTGGTCTACATCGCCACCATAAGGTTTTGAAGGTACATAGACATCTTTGCAAGGAAGTTATATCCCTGCGTGCTATAGAAAAATACATCGACTGTTCGCAAATTCAGATCCATAAAAGGAACAGGCGACCGGTTATTTCTCTGAATCCTCTCCAATTCGATGAGTTAGGATCAAATGATCAAGAATCGTGCCAAGTTTGCAACAGAAGGCTGAATATACCTGAATTATATCGTTACTGCTCGATTTATTGCAAGGTCGAATCAGTTTCGAAAAAGTCCGAGCTTGAAAATACAGTTAGCACAACACCAGTTGAGTCTTCCTCGGTACCTTCCATCCAAAGTCCTCCTCCTCCACCTCCTCAGGGAACACTAGAGGGCACCTCTGTGTTTTCATTCCGAAAAAGGAAACGAAAGGGAATCCCCCAGAGAGCTCCCTTCTATTGA 639 0.4085 MTSDYSTTSYMDQLVTQSNVEKPMWFDAFLKENFFESCSTHPLRKNELNKYCIDCNMLICQHCVSSGLHRHHKVLKVHRHLCKEVISLRAIEKYIDCSQIQIHKRNRRPVISLNPLQFDELGSNDQESCQVCNRRLNIPELYRYCSIYCKVESVSKKSELENTVSTTPVESSSVPSIQSPPPPPPQGTLEGTSVFSFRKRKRKGIPQRAPFY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05406 212 Gene3D Classic Zinc Finger 6 79 - -
Trre7g05406 212 ProSiteProfiles Zinc finger B-box type profile. 38 77 IPR000315 GO:0008270
Trre7g05406 212 MobiDBLite consensus disorder prediction 160 212 - -
Trre7g05406 212 SUPERFAMILY B-box zinc-binding domain 37 81 - -
Trre7g05406 212 MobiDBLite consensus disorder prediction 160 174 - -
Trre7g05406 212 CDD Bbox2 38 77 - -
Trre7g05406 212 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 19 211 - -
Trre7g05406 212 Pfam PLATZ transcription factor 79 151 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05406 Trre-Chr7 60081101 60082755 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre7g05406 PLATZ 7.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05406 - - tpra:123915973 315.464