LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g05402	ATGTGGGGATGGTTGATTAGAGAAGGCCGAAAAGTATCATCATCATCATCACCATGGAACCTAAACCTCATCCGTAACATGGGTGGCGGTCCTCGCACTTTCCCCGGCGGCGTAAGCAAATGGAAATGGAAACGTATGCACGAAAAACGTGCCAAAGATAAACAGAAAAACCTTCTCGAACAAGAGAAACAGCTCTATCAAGCACGCATTCGATCTCAAATACGTTCCACTCTCTCACCTTCTTCATCTTCTTCTTCCTCTACTCATAACCCTATTTCCCCTCATCAACACATCAAAGCCCTCGCTGATCGTTTCATGAAAGACGGTGCTCAAGATCTCTGGAACCACTCCGATGGCCCATTAACCCCAATCGAAGCTCAACCCCAAATTGAAGCCCAATCTTCTCCGCAAATTGATTTACGCAAACTCACACACCAATCTTCAAATCAGAATTTGCATAATTTTTCACAAATTAGGGGTTTCCGTTCTGTTCCCGATGTTAGGGATTTGAGTGATAGGAAGTGTGATTCCAGTGATAGGAAGCGTGTTGGAACAGAAAAGAAAAGAATTTGGAGAAAGAATGATTCTTCTAGTGACAGTGAGAGTGAGGATGAAGTTGAATCTCAGAATCAGGGTTATTATTCTAATGTGGGTAGTATTGCTTCTTTGGGTAAACATGATGCGAAGAGGGAGAGGAGAGTCATGCCTAAGAAATTCGATGATGGAACTGATTTTTCGGAGCAGGTTCAGTTGATTAAGTATGAGATTCATAAGAAGAAGTTGAATCAGAATGGGAATAATCAGGGTGAGGAACAAGAAAACATTCTTAGTCAGACAAGATTTGACGAGTGTGCTATATCACCATTGACAATCAAAGCACTTTCTTCATCTGGTTACGTTCATATGACCCGGATTCAAGAGGCTAGCCTTCCTATTTGCCTTGAGGGTGTGGATGTTATGGTCAAGGCTAAAACTGGCACCGGAAAAACTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAAGCTATGAGTAGCAATACCTCTCATCGTGCACCACCAATATATGTTCTTATTCTATGCCCTACCAGAGAACTTGCTAGTCAACTTGCTGCTGAAGCAAAGGTTTTACTGAAATATCATGATGGCATTGGAGTGCAGACTCTAGTTGGAGGTGTACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGAGCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAATCTGGGATATCTGTACGATTGATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTTGGGTTTCGAAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGGCAAAGGCAATCCTTGCTGTTTTCTGCAACCATGCCAAAGGAGGTCCGGCGAATATCTCAGGTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATAGGCTGTGTGGAAACTCCTGTTGAGGTAAAACAATCCTATCTTATCGCTCCACATGAATCACACTTTCAGATAGTGCATCATATTTTGAAAGACCATATCTCGCAAACACCTGATTATAAGGTTATTGTTTTTTGTATAACTGCGATGGTGACATCACTCACGTATCACCTTCTTCGGGATATGAAACTCAACGTTAGGGAGCTACATTCTCGAAAACCTCAGCTCTATCGAACCCGCGTATCAGATGAGTTTAAAGAATCCAAACAAATGATTCTTGTCTCCTCCGATGTTGGAATAAGTTATCCTGATGTCACATTAGTCATACAGGTGGGAATTCCTTCAGACCGTGAACAATATATACATCGTCTAGGAAGAACGGGACGAGAAGGCAAAGAAGGAAAAGGCATATTGTTGATTGCACCATGGGAAGAGTATTTTATAAATGAGATCAAGGATATCCCTCTAGAGAAATTCCCCTTACCAGATTTAGATCCACAGGCACAACTTAAGATTGGGCAATCAATGGCTAAGATTGATAATGACGTCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTACAACTCCATCATGGAGATTGGGAGGGAGAAGACCACAGTAGCTGAGCTGGCAAACCGGTTTTCTGAATCAATTGGTTTAGAAAGGCCGCCTTCTCTCTTCCGAAAAACTGCACTTAAAATGGGTTTGAAAGACATTCCTGGCATCAGAATTCGCAGATAG	2238	0.4182	MWGWLIREGRKVSSSSSPWNLNLIRNMGGGPRTFPGGVSKWKWKRMHEKRAKDKQKNLLEQEKQLYQARIRSQIRSTLSPSSSSSSSTHNPISPHQHIKALADRFMKDGAQDLWNHSDGPLTPIEAQPQIEAQSSPQIDLRKLTHQSSNQNLHNFSQIRGFRSVPDVRDLSDRKCDSSDRKRVGTEKKRIWRKNDSSSDSESEDEVESQNQGYYSNVGSIASLGKHDAKRERRVMPKKFDDGTDFSEQVQLIKYEIHKKKLNQNGNNQGEEQENILSQTRFDECAISPLTIKALSSSGYVHMTRIQEASLPICLEGVDVMVKAKTGTGKTAAFLLPAIETVLKAMSSNTSHRAPPIYVLILCPTRELASQLAAEAKVLLKYHDGIGVQTLVGGVRFKVDQKRLESEPCQILVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATMPKEVRRISQVVLKREHKYVDTVGIGCVETPVEVKQSYLIAPHESHFQIVHHILKDHISQTPDYKVIVFCITAMVTSLTYHLLRDMKLNVRELHSRKPQLYRTRVSDEFKESKQMILVSSDVGISYPDVTLVIQVGIPSDREQYIHRLGRTGREGKEGKGILLIAPWEEYFINEIKDIPLEKFPLPDLDPQAQLKIGQSMAKIDNDVKEAAYHAWLGYYNSIMEIGREKTTVAELANRFSESIGLERPPSLFRKTALKMGLKDIPGIRIRR	745

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g05402	745	Gene3D	-	245	494	IPR027417	-
	Trre7g05402	745	Pfam	DEAD/DEAH box helicase	303	481	IPR011545	GO:0003676\|GO:0005524
	Trre7g05402	745	Coils	Coil	44	69	-	-
	Trre7g05402	745	MobiDBLite	consensus disorder prediction	74	95	-	-
	Trre7g05402	745	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	527	682	IPR001650	-
	Trre7g05402	745	Pfam	Helicase conserved C-terminal domain	528	628	IPR001650	-
	Trre7g05402	745	SMART	helicmild6	551	629	IPR001650	-
	Trre7g05402	745	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	279	307	IPR014014	GO:0003724
	Trre7g05402	745	SMART	ultradead3	298	509	IPR014001	-
	Trre7g05402	745	MobiDBLite	consensus disorder prediction	168	219	-	-
	Trre7g05402	745	Gene3D	-	503	724	IPR027417	-
	Trre7g05402	745	PANTHER	RNA HELICASE	229	674	-	-
	Trre7g05402	745	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	276	488	IPR027417	-
	Trre7g05402	745	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	310	493	IPR014001	-
	Trre7g05402	745	MobiDBLite	consensus disorder prediction	168	199	-	-
	Trre7g05402	745	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	435	643	IPR027417	-
	Trre7g05402	745	CDD	SF2_C_DEAD	508	638	-	-
	Trre7g05402	745	MobiDBLite	consensus disorder prediction	74	94	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g05402	Trre-Chr7	60052589	60056671	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g05402	270	654	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.475	1.14e-40	152

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g05402	-		-	gmx:100808520	1025