Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05386 ATGGATCAAACAACCTTAAACAACATAGAAACAATGGATGTTTCAAAGAGGTTTGGAGATTATAGAACACAAGGGGAATTTTCTGTTGACTTGAAACTTGGCCATGTTGGAAATTCTAGTACTGAATCAGTGGTTACAAAGTCAAAAGATGTTGTTAGTGGAGTTTCAACAAAAATGACATCTTCATCATCTTCAGGTTCAGGGTCATCTAAGAGAGCTAGAGCTATTAACAATGGAAATCAAATAGTTTCATGTCTTGTTGATGGTTGTCAAGCTGATCTTAGTAACTGTAGAGATTATCATAGGCGCCATAAGGTTTGTGAACTTCATTCCAAGACTGCACAAGTCACAATTGGTGGACATAAGCAAAGGTTTTGCCAACAATGTAGCAGGTTCCATTCATTGGAGGAATTTGATGAAGGAAAGAGGAGCTGTAGGAAACGTTTAGATGGACACAACCGACGGAGAAGAAAGCCACAAGCAGAACCTATAACTCGAAGTAGTAGCTTTTTGTCCAATTACCAAGGAACCCAGTTGTTACCCTTCTCAAGTTCACACATATACCCTTCTACTGCTATGGTGAATCCAACTTGGGGTGGAGGAGATGTTAGGCTCCATAGCCACAACCAACACCAACCAATGCACCACCATTTGGTCGAAAAACAAGACCTTTTCCTTGGAACATCATCTCCAACAAGCAGCTACAAAGAAAGCAACAGCCACAGGACACAACAACAACAACAACAACTCCAGAACACAACAACAGCCACACTCAGCAACAACCAACATCTTCCAACTGGTTTGAGTCCAACTTTTCACAGGAACACGACCAACCCATTTTCAGAAAGATGCAAAATGTTCTGTGACAACAACAATAACAACAACAGCAGCAGCAATAGTTTTTCCTGTGCTCTCTCTCTTCTGTCATCACCAGTACCACCACAGACACATGATCATCATCATGAAAATAGATTGAATGATATGGTGAATACTACTCACTCATCTTTTATGCAACCTTTAGGTTTGAGTTTGCATGATCATAGCTTGGGATCTGTGGACTCTGTTTTGGGTTCAAATGATCAGAATGCTCATTGTTCTTCAATCTATAACATGGGTTCTAATGATCAATCTCATTCTCATGAGGGGAATCATAATGAAGCTCCTCCATTATTTCCATTTCAATGGGATTAG 1191 0.4005 MDQTTLNNIETMDVSKRFGDYRTQGEFSVDLKLGHVGNSSTESVVTKSKDVVSGVSTKMTSSSSSGSGSSKRARAINNGNQIVSCLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEPITRSSSFLSNYQGTQLLPFSSSHIYPSTAMVNPTWGGGDVRLHSHNQHQPMHHHLVEKQDLFLGTSSPTSSYKESNSHRTQQQQQQLQNTTTATLSNNQHLPTGLSPTFHRNTTNPFSERCKMFCDNNNNNNSSSNSFSCALSLLSSPVPPQTHDHHHENRLNDMVNTTHSSFMQPLGLSLHDHSLGSVDSVLGSNDQNAHCSSIYNMGSNDQSHSHEGNHNEAPPLFPFQWD 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05386 396 FunFam Squamosa promoter-binding-like protein 14 76 146 - -
Trre7g05386 396 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 380 IPR044817 GO:0003677
Trre7g05386 396 ProSiteProfiles Zinc finger SBP-type profile. 82 159 IPR004333 GO:0003677
Trre7g05386 396 MobiDBLite consensus disorder prediction 227 253 - -
Trre7g05386 396 SUPERFAMILY SBT domain 83 164 IPR036893 GO:0003677|GO:0005634
Trre7g05386 396 Gene3D - 76 146 IPR036893 GO:0003677|GO:0005634
Trre7g05386 396 MobiDBLite consensus disorder prediction 373 396 - -
Trre7g05386 396 Pfam SBP domain 85 158 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05386 Trre-Chr7 59927855 59931776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05386 8 258 SBP-box Gene Family AT5G50670 48.507 5.89e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre7g05386 SBP 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05386 - - mtr:25502014 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05386 7 59927855 59931776 Trre7g05386 7 59927855 59931776 ECH
Trre7g05386 7 59927855 59931776 Trre5g04676 5 48731428 48734881 PCT