Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05385 ATGGAGTGGAACAATTTGAAAGCACCTTCATGGGATTTAACAGAAATGGATCAAACAACCTTAAACAACATAGAAACAATGGATGTTTCAAAGAGGTTTGGAGATTATAGAACACAAGGGGAATTTTCTGTTGACTTGAAACTTGGCCATGTTGGAAATTCTAGTACTGAATCAGTGGTTACAAAGTCAAAAGATGTTGTTAGTGGAGTTTCAACAAAAATGACATCTTCATCATCTTCAGGTTCAGGGTCATCTAAGAGAGCTAGAGCTATTAACAATGGAAATCAAATAGTTTCATGTCTTGTTGATGGTTGTCAAGCTGATCTTAGTAACTGTAGAGATTATCATAGGCGCCATAAGGTTTGTGAACTTCATTCCAAGACTGCACAAGTCACAATTGGTGGACATAAGCAAAGGTTTTGCCAACAATGTAGCAGGTTCCATTCATTGGAGGAATTTGATGAAGGAAAGAGGAGCTGTAGGAAACGTTTAGATGGACACAACCGACGGAGAAGAAAGCCACAAGCAGAACCTATAACTCGAAGTAGTAGCTTTTTGTCCAATTACCAAGGAACCCAGTTGTTACCCTTCTCAAGTTCACACATATACCCTTCTACTGCTATGGTGAATCCAACTTGGGGTGGAGGAGATGTTAGGCTCCATAGCCACAACCAACACCAACCAATGCACCACCATTTGGTCGAAAAACAAGACCTTTTCCTTGGAACATCATCTCCAACAAGCAGCTACAAAGAAAGCAACAGCCACAGGACACAACAACAACAACAACAACTCCAGAACACAACAACAGCCACACTCAGCAACAACCAACATCTTCCAACTGGTTTGAGTCCAACTTTTCACAGGAACACGACCAACCCATTTTCAGAAAGATGCAAAATGTTCTGTGACAACAACAATAACAACAACAGCAGCAGCAATAGTTTTTCCTGTGCTCTCTCTCTTCTGTCATCACCAGTACCACCACAGACACATGATCATCATCATGAAAATAGATTGAATGATATGGTGAATACTACTCACTCATCTTTTATGCAACCTTTAGGTTTGAGTTTGCATGATCATAGCTTGGGATCTGTGGACTCTGTTTTGGGTTCAAATGATCAGAATGCTCATTGTTCTTCAATCTATAACATGGGTTCTAATGATCAATCTCATTCTCATGAGGGGAATCATAATGAAGCTCCTCCATTATTTCCATTTCAATGGGATTAG 1236 0.3997 MEWNNLKAPSWDLTEMDQTTLNNIETMDVSKRFGDYRTQGEFSVDLKLGHVGNSSTESVVTKSKDVVSGVSTKMTSSSSSGSGSSKRARAINNGNQIVSCLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEPITRSSSFLSNYQGTQLLPFSSSHIYPSTAMVNPTWGGGDVRLHSHNQHQPMHHHLVEKQDLFLGTSSPTSSYKESNSHRTQQQQQQLQNTTTATLSNNQHLPTGLSPTFHRNTTNPFSERCKMFCDNNNNNNSSSNSFSCALSLLSSPVPPQTHDHHHENRLNDMVNTTHSSFMQPLGLSLHDHSLGSVDSVLGSNDQNAHCSSIYNMGSNDQSHSHEGNHNEAPPLFPFQWD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05385 411 MobiDBLite consensus disorder prediction 388 411 - -
Trre7g05385 411 MobiDBLite consensus disorder prediction 242 268 - -
Trre7g05385 411 ProSiteProfiles Zinc finger SBP-type profile. 97 174 IPR004333 GO:0003677
Trre7g05385 411 SUPERFAMILY SBT domain 98 179 IPR036893 GO:0003677|GO:0005634
Trre7g05385 411 MobiDBLite consensus disorder prediction 69 88 - -
Trre7g05385 411 FunFam Squamosa promoter-binding-like protein 14 91 161 - -
Trre7g05385 411 Gene3D - 91 161 IPR036893 GO:0003677|GO:0005634
Trre7g05385 411 Pfam SBP domain 100 173 IPR004333 GO:0003677
Trre7g05385 411 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 395 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05385 Trre-Chr7 59927810 59931776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05385 1 273 SBP-box Gene Family AT5G50670 47.586 8.20e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre7g05385 SBP 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05385 - - mtr:25502014 589.726