Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05365 ATGGGATACTCTGAAACTGCTCAATTCAGGTTTCTTTCCACTGTGAATCTTGTAAATGAGAATCTAGACTTAAGCATTGCTTCCATCGATCGACTGAATATTCAAGCAACAAGCCCAGAATCAGACGTTACTGGATCATATAATCAGTTATTTTCAAATGGATCAAGCACTGTTACCGACCGTTCTGTAGGCCACTGTAAACATAGTCTATCAGATGCAGCTAGCAGAAATGGGAGCAAAACAAAGGATAATGAATCCCGTAACGAGACTGAATGGGTAGAGCAAGATGAACCTGGTGTATATATTACTCTCACTTCCCTGTCAGGCGGTACAATAGATCTTAAGAGGGTTCGATTCAGTCGCAAGCGGTTTAGTGAGAAACAAGCAGAACATTGGTGGGCTGAGAATCGGATAAGAGTATATGAAAAGTACAATGTGCGCATGATTGACAAATCGACCATTGGTATTGGGAGTGTGGACCTGGCTCATTGA 492 0.4187 MGYSETAQFRFLSTVNLVNENLDLSIASIDRLNIQATSPESDVTGSYNQLFSNGSSTVTDRSVGHCKHSLSDAASRNGSKTKDNESRNETEWVEQDEPGVYITLTSLSGGTIDLKRVRFSRKRFSEKQAEHWWAENRIRVYEKYNVRMIDKSTIGIGSVDLAH 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05365 163 ProSiteProfiles BRX domain profile. 90 145 IPR013591 -
Trre7g05365 163 MobiDBLite consensus disorder prediction 69 92 - -
Trre7g05365 163 Pfam Transcription factor regulating root and shoot growth via Pin3 89 144 IPR013591 -
Trre7g05365 163 Pfam Unstructured region between BRX_N and BRX domain 23 83 - -
Trre7g05365 163 PANTHER PROTEIN BREVIS RADIX-LIKE 1 48 144 IPR044532 -
Trre7g05365 163 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05365 Trre-Chr7 59747327 59748218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05365 91 154 Major Intrinsic Protein MIP AT1G31880 48.438 4.97e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05365 - - gmx:100806439 233.417