Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05359 ATGATTAATGGTAGGTGTGCAGCTTGCAAAAATCAAAGAAGAAGGTGTCCTTCAGATTGCATTTTCTCTCCATATTTCCCTCCCAATGATCCTCAAAGATATGCTTCCGTTCATCGAATCTATGGCGGTAGCAATGTTGGAAAAATGCTTCGGCAATTGCCTCCCTATGTAAGACAACAAACTACAAATACTTTGTATTTAGAAGCACAATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTATCTCTAAATTGTATGAACAAATCCATGATACAGAAATTGAGCTAGCCAAAATCCAAAATCAAATTGCTTATCATAAACTCCAAAATCCACAATTTGAAGCTGAATCAAATTTCAATGACTTGTCCAAGGTTGATGCTGAATTAAGTTTAAACTTTTTACCACCACAAAGCAGCAGCATGGGGCCTACTCAAGATCCTAATTGGTTCGATTAA 462 0.368 MINGRCAACKNQRRRCPSDCIFSPYFPPNDPQRYASVHRIYGGSNVGKMLRQLPPYVRQQTTNTLYLEAQCRIQDPVYGCVGIISKLYEQIHDTEIELAKIQNQIAYHKLQNPQFEAESNFNDLSKVDAELSLNFLPPQSSSMGPTQDPNWFD 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05359 153 Coils Coil 84 104 - -
Trre7g05359 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 121 - -
Trre7g05359 153 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Trre7g05359 153 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05359 Trre-Chr7 59724744 59725446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05359 5 106 AS2 family AT3G26660 64.706 2.45e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre7g05359 LOB 2.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05359 - - lang:109328513 226.868