Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05348 ATGATTAATGGTAGGTGTGCAGCTTGCAAAAATCAAAGAAGAAGGTGTCCTTCTGATTGCATTTTCTCTCCATATTTCCCTCCCAATGATCCTCAAAGATTTGCTTCTGTTCATCGAATCTATGGTGGTAGCAATGTTGGAAAAATGCTTCGGCAATTGCCTCCCTATGTACGACAACAAGCTGCAAATACTTTATATTTAGAAGCACAATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTATCTCTAAATTGTATGAACAAATCCATGATACAGAAATTGAGCTAGCCAAAATCCAAAATCAAATTGCTTATCATAAACTCCAAAATTCCCAAACCACGCTTATATTTTAG 360 0.3639 MINGRCAACKNQRRRCPSDCIFSPYFPPNDPQRFASVHRIYGGSNVGKMLRQLPPYVRQQAANTLYLEAQCRIQDPVYGCVGIISKLYEQIHDTEIELAKIQNQIAYHKLQNSQTTLIF 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05348 119 Coils Coil 84 104 - -
Trre7g05348 119 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Trre7g05348 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 111 - -
Trre7g05348 119 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05348 Trre-Chr7 59650751 59651279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05348 5 115 AS2 family AT3G26660 63.964 5.08e-49 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre7g05348 LOB 1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05348 - - mtr:25497793 206.838