Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05340 ATGGATGATGACCATCAATATGAAAATGGTAGGCATAAGGTGGAATACTACAGAGGAGCACATCCCCCGTGGAATACGGATTCCCAGCATCAAATAAAGGAACAAAATGCCCTAGTTATGAATAAAAAAATTAGGTCCATTATGGCTGAAAGGCAGGCTGCCCTTTTGGAACTTGAACTAGAGACTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCCTTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCTCTATTGGAACGGGATAATGCCCTTGCAGCCCTTCAAAGTCGGAGTGGTGCTGCCAACTTTCCATTCAATGGTGGAATTCAACGAGGATCAAAGCGGATGCACCATTCTTCAAACCATAATATATCCAACATGGCAGAAGCAGCGTATAACACGACGGATATAATAATAAGAGATGCTTCCCCGGTTACTGTTATAACTTCTGAAGCTGTCAAATCTCATCTAACTAAGAGAACAAAGGAGAACAAGGCATCAAAGCCACCAACCAAAATAAAAAAACTGGGTGAAGATTTAAATAGGAAGGCTTATTCTGAAGGAACAAAGATCAAATCCGAATGGGATAGACAGGATGTTGGCTTGAATTTGATTGCTTTCGATGAAACTGTCATGCCTGTCCCAGTTTGCTCGTGTACCGGAGTACCACGACAGTGCTACAAATGGGGGAATGGTGGATGGCAATCATCTTGTTGTACCACTACATTGTCAATGCATCCACTACCACAGCTTCCCAACAAGCGCCATGCTCGCATTGGAGGGCGGAAAATGAGTGGCAGTGTTTTTATCAGACTTCTCAGTAGGTTTGCATCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGGATTATTGGGCCAGACATGGAACAAATCGTTACATTACTATCAAGTAG 942 0.4331 MDDDHQYENGRHKVEYYRGAHPPWNTDSQHQIKEQNALVMNKKIRSIMAERQAALLELELETAISEKNEALAARDAALRQRDEALAQRDNALLERDNALAALQSRSGAANFPFNGGIQRGSKRMHHSSNHNISNMAEAAYNTTDIIIRDASPVTVITSEAVKSHLTKRTKENKASKPPTKIKKLGEDLNRKAYSEGTKIKSEWDRQDVGLNLIAFDETVMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSGSVFIRLLSRFASEGHDLSIPLDLKDYWARHGTNRYITIK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05340 313 Coils Coil 53 94 - -
Trre7g05340 313 PANTHER - 1 313 IPR010409 -
Trre7g05340 313 SMART GAGA_bind_2 1 313 IPR010409 -
Trre7g05340 313 Pfam GAGA binding protein-like family 1 313 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05340 Trre-Chr7 59576306 59577341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05340 1 313 BBR or BPC Transcription factor family AT2G21240 57.278 1.67e-124 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trre7g05340 GAGA_bind 1.6e-98 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05340 - - gmx:100813103 522.702