LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g05334	ATGGCAACAACACAACCTGAATTTGAACATCCTAACAAGGCCTTTGGTTTGGCAGCTAGAGACCCTTCTGGTCTTCTATCCCCTTTCAATTTCTCTAGAAGGGAAACCGGTGAAAAAGATGTTGCATTTAAAGTATTGTATTGTGGGATATGTCACTCTGATCTCCACATGGTGAAAAATGAATGGGGAATGTCAACCTATCCATTAGTTCCTGGGCATGAGATTGCTGGTATAGTGACAGAGGTGGGAAGCAAGGTACAAAAGTTCAAAGTTGGAGACAGAGTTGGTGTTGGCTGCATGGTTGATTCGTGTCGCACGTGCCAAAATTGCGAAGACAATCTTGAGAATTATTGTCCTCAATATACACTCACATATGGTGCAAAACATAGTGATGGCACAATCACATATGGCGGCTACTCTGACTCAATGGTTGCGAACGAGCATTTTGTGGTTCGCATTCCTGATAACTTACCACTTGAAGCTGCTGCTCCTCTGCTTTGTGCTGGTATCACAGTGTATAGTCCTCTTAAATATTTTGGACTCGACAAGCCCGGGCTTCATATCGGTGTTGTTGGGCTTGGCGGACTTGGTTATATGGCTGTGAAATTCGCCAAAGCTTTTGGTGCTAATGTCACAGTAATTAGCACATCGCCTAACAAAGAAAACGAAGCAATAGAACACTTAGGAGCCGATACATTTCTGATAAGTCGCGACCAAGATAAGATGCAGGCTACAGTAGGTACTTTGGATTTTATAATCGATACAGTTTCGGCGGCTCATCCTCTCTTACCTCTAATTGGATTACTGAAGTCTAATGGAAAGCTTGATGACATGGAACATTTTGGTGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGAACTTATTTGGGACATTGAAATGGAACCCTTCTGAGGATGCTATAGATGCTTCAAAAGCCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTATCATTTCTTGTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATAGAGACACTGCAAACAAAGAGCACACCCAAGGAAAACACTGTTATTATTACCGAAGTTCGCTTCAGATCAAATTCAACTCAGCTGGCAACATCTTCGTTTGATGCAACTGTGCGGCTTTAG	1215	0.4198	MATTQPEFEHPNKAFGLAARDPSGLLSPFNFSRRETGEKDVAFKVLYCGICHSDLHMVKNEWGMSTYPLVPGHEIAGIVTEVGSKVQKFKVGDRVGVGCMVDSCRTCQNCEDNLENYCPQYTLTYGAKHSDGTITYGGYSDSMVANEHFVVRIPDNLPLEAAAPLLCAGITVYSPLKYFGLDKPGLHIGVVGLGGLGYMAVKFAKAFGANVTVISTSPNKENEAIEHLGADTFLISRDQDKMQATVGTLDFIIDTVSAAHPLLPLIGLLKSNGKLDDMEHFGDVGSLDDNVESFLSQDDGDGKNLFGTLKWNPSEDAIDASKAFSFSEVSSIRKSNGKVVCYHFLSDGKLLASAGHDKKVVLWNIETLQTKSTPKENTVIITEVRFRSNSTQLATSSFDATVRL	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g05334	404	Pfam	Alcohol dehydrogenase GroES-like domain	39	152	IPR013154	-
	Trre7g05334	404	CDD	CAD1	15	275	IPR047109	GO:0016616
	Trre7g05334	404	Gene3D	-	308	404	IPR015943	GO:0005515
	Trre7g05334	404	Gene3D	-	18	167	-	-
	Trre7g05334	404	PANTHER	ALDEHYDE REDUCTASE	6	275	IPR047109	GO:0016616
	Trre7g05334	404	ProSiteProfiles	Trp-Asp (WD) repeats profile.	332	373	IPR001680	GO:0005515
	Trre7g05334	404	SMART	PKS_ER_names_mod	24	341	IPR020843	GO:0016491
	Trre7g05334	404	ProSitePatterns	Trp-Asp (WD) repeats signature.	351	365	IPR019775	-
	Trre7g05334	404	SMART	WD40_4	325	364	IPR001680	GO:0005515
	Trre7g05334	404	FunFam	Cinnamyl alcohol dehydrogenase	168	281	-	-
	Trre7g05334	404	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	157	275	IPR036291	-
	Trre7g05334	404	Gene3D	-	168	275	-	-
	Trre7g05334	404	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	72	86	IPR002328	GO:0008270\|GO:0016491
	Trre7g05334	404	Pfam	Zinc-binding dehydrogenase	195	274	IPR013149	-
	Trre7g05334	404	SUPERFAMILY	WD40 repeat-like	325	404	IPR036322	GO:0005515
	Trre7g05334	404	FunFam	Uncharacterized protein	17	167	-	-
	Trre7g05334	404	SUPERFAMILY	GroES-like	20	185	IPR011032	-
	Trre7g05334	404	Pfam	WD domain, G-beta repeat	337	364	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g05334	Trre-Chr7	59549028	59552284	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g05334	12	275	Monolignol Biosynthesis Gene Families	AT4G37990	72.348	4.44e-126	366

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g05334	K23232		-	gmx:100816901	458.373