LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g05333	ATGGCAACAACACAACCTGAATTTGAACATCCTAACAAGGCCTTTGGTTTGGCAGCTAGAGACCCTTCTGGTCTTCTATCCCCTTTCAATTTCTCTAGAAGGGAAACCGGTGAAAAAGATGTTGCATTTAAAGTATTGTATTGTGGGATATGTCACTCTGATCTCCACATGGTGAAAAATGAATGGGGAATGTCAACCTATCCATTAGTTCCTGGGCATGAGATTGCTGGTATAGTGACAGAGGTGGGAAGCAAGGTACAAAAGTTCAAAGTTGGAGACAGAGTTGGTGTTGGCTGCATGGTTGATTCGTGTCGCACGTGCCAAAATTGCGAAGACAATCTTGAGAATTATTGTCCTCAATATACACTCACATATGGTGCAAAACATAGTGATGGCACAATCACATATGGCGGCTACTCTGACTCAATGGTTGCGAACGAGCATTTTGTGGTTCGCATTCCTGATAACTTACCACTTGAAGCTGCTGCTCCTCTGCTTTGTGCTGGTATCACAGTGTATAGTCCTCTTAAATATTTTGGACTCGACAAGCCCGGGCTTCATATCGGTGTTGTTGGGCTTGGCGGACTTGGTTATATGGCTGTGAAATTCGCCAAAGCTTTTGGTGCTAATGTCACAGTAATTAGCACATCGCCTAACAAAGAAAACGAAGCAATAGAACACTTAGGAGCCGATACATTTCTGATAAGTCGCGACCAAGATAAGATGCAGGCTACAGTAGGTACTTTGGATTTTATAATCGATACAGTTTCGGCGGCTCATCCTCTCTTACCTCTAATTGGATTACTGAAGTCTAATGGAAAGCTTTTGCAGGATGACATGGAACATTTTGGTGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGAACTTATTTGGGACATTGAAATGGAACCCTTCTGAGGATGCTATAGATGCTTCAAAAGCCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTATCATTTCTTGTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATAGAGACACTGCAAACAAAGAGCACACCCAAGGAAAACACTGTTATTATTACCGAAGTTCGCTTCAGATCAAATTCAACTCAGCTGGCAACATCTTCGTTTGATGCAACTGTGCGGCTTTAG	1221	0.4201	MATTQPEFEHPNKAFGLAARDPSGLLSPFNFSRRETGEKDVAFKVLYCGICHSDLHMVKNEWGMSTYPLVPGHEIAGIVTEVGSKVQKFKVGDRVGVGCMVDSCRTCQNCEDNLENYCPQYTLTYGAKHSDGTITYGGYSDSMVANEHFVVRIPDNLPLEAAAPLLCAGITVYSPLKYFGLDKPGLHIGVVGLGGLGYMAVKFAKAFGANVTVISTSPNKENEAIEHLGADTFLISRDQDKMQATVGTLDFIIDTVSAAHPLLPLIGLLKSNGKLLQDDMEHFGDVGSLDDNVESFLSQDDGDGKNLFGTLKWNPSEDAIDASKAFSFSEVSSIRKSNGKVVCYHFLSDGKLLASAGHDKKVVLWNIETLQTKSTPKENTVIITEVRFRSNSTQLATSSFDATVRL	406

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g05333	406	ProSiteProfiles	Trp-Asp (WD) repeats profile.	334	375	IPR001680	GO:0005515
	Trre7g05333	406	FunFam	Cinnamyl alcohol dehydrogenase	168	282	-	-
	Trre7g05333	406	Pfam	WD domain, G-beta repeat	339	366	IPR001680	GO:0005515
	Trre7g05333	406	Gene3D	-	168	276	-	-
	Trre7g05333	406	Pfam	Alcohol dehydrogenase GroES-like domain	39	152	IPR013154	-
	Trre7g05333	406	CDD	CAD1	15	275	IPR047109	GO:0016616
	Trre7g05333	406	Gene3D	-	310	406	IPR015943	GO:0005515
	Trre7g05333	406	ProSitePatterns	Trp-Asp (WD) repeats signature.	353	367	IPR019775	-
	Trre7g05333	406	SMART	PKS_ER_names_mod	24	364	IPR020843	GO:0016491
	Trre7g05333	406	Gene3D	-	18	167	-	-
	Trre7g05333	406	PANTHER	ALDEHYDE REDUCTASE	6	276	IPR047109	GO:0016616
	Trre7g05333	406	Pfam	Zinc-binding dehydrogenase	195	275	IPR013149	-
	Trre7g05333	406	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	72	86	IPR002328	GO:0008270\|GO:0016491
	Trre7g05333	406	SMART	WD40_4	327	366	IPR001680	GO:0005515
	Trre7g05333	406	FunFam	Uncharacterized protein	17	167	-	-
	Trre7g05333	406	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	157	276	IPR036291	-
	Trre7g05333	406	SUPERFAMILY	GroES-like	20	185	IPR011032	-
	Trre7g05333	406	SUPERFAMILY	WD40 repeat-like	327	406	IPR036322	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g05333	Trre-Chr7	59549028	59552284	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g05333	12	277	Monolignol Biosynthesis Gene Families	AT4G37990	71.805	2.70e-126	367

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g05333	K23232		-	gmx:100816901	458.759