Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05331 ATGGCAGCTTTTTCATACCAATACCAACAACCTTTCTTTGTTGACTCTGCTGCTTATTTTACTACTAAGATGTCTTCTCTTGATGAACAAGTCCATATTATAAACAGTAGTAGTTGTTTTGATCAAAACAGCTCTAAGAATAGCTTATGTGAGAATCTCAGTCCTGAATCATCATCTATGGTTGTTGATAATCTTGAAAAGGGTGAAGAACAAGTTACTCAGAAAGTTAGTTCTATGGAGAAGAAGAGAAGAGTTAGAAACAAGTCTTCTTTGAGTAGCCCCTTATCAAAGGATGCAAAAGAAGGGAGAGGGAAAAAACAAAAGAAGAGTAGTGGTGAGGAGAAGAAAAAAGAAGAGAAGAAAGATCAAAAGAAAAATGTTGAAGAAGCTCCAACTGGCTATATCCATGTCAGAGCAAGAAGGGGTCAGGCAACAGATAGCCATAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGGTATTGCAGCAACTTGTGCCTGGCTGTGATAAGGTAACTGGGAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTACAGTCCCTACAGAATCAAGTAGAGTTCTTGTCAATGAAACTTGCTTCAGTGAATCCAATGCTCTTTGACTTTTCAATGGACCAAGATCATCAGAGATTAAATAGCATAACATCACCATCACCATTATCAGTACCACTACAATCTGTAGCATTATGCAGCTCCAACCATGCCACACCTTTTGCTGAGACAAGCTTCCACACTGCTAATAATGATCACTATGTTTTGGATTATCCAACTCAAGTTTTTCTTCAAGGACAGAGGTCAAATACCTTCTTTGAGCACACTGATGGACCTTTTTGGGATGTAGAAGATCAACGACAAAAGCTTCTTAATCCATATGGATTCGGCAACAATACATGTTCCTTAAATTAA 942 0.3822 MAAFSYQYQQPFFVDSAAYFTTKMSSLDEQVHIINSSSCFDQNSSKNSLCENLSPESSSMVVDNLEKGEEQVTQKVSSMEKKRRVRNKSSLSSPLSKDAKEGRGKKQKKSSGEEKKKEEKKDQKKNVEEAPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQQLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMLFDFSMDQDHQRLNSITSPSPLSVPLQSVALCSSNHATPFAETSFHTANNDHYVLDYPTQVFLQGQRSNTFFEHTDGPFWDVEDQRQKLLNPYGFGNNTCSLN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05331 313 SMART finulus 149 199 IPR011598 GO:0046983
Trre7g05331 313 FunFam Basic helix-loop-helix transcription factor 140 213 - -
Trre7g05331 313 MobiDBLite consensus disorder prediction 98 151 - -
Trre7g05331 313 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 45 238 IPR024097 GO:0006355
Trre7g05331 313 CDD bHLH_AtBPE_like 133 217 - -
Trre7g05331 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 210 IPR036638 GO:0046983
Trre7g05331 313 Coils Coil 110 130 - -
Trre7g05331 313 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983
Trre7g05331 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 193 IPR011598 GO:0046983
Trre7g05331 313 MobiDBLite consensus disorder prediction 65 151 - -
Trre7g05331 313 Gene3D - 140 212 IPR036638 GO:0046983
Trre7g05331 313 MobiDBLite consensus disorder prediction 68 87 - -
Trre7g05331 313 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05331 Trre-Chr7 59530826 59533149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05331 1 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 49.573 6.01e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g05331 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05331 - - pvu:PHAVU_002G283100g 308.916