Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05322 ATGCATTTCACAAATCTCGATGACACTCCTATGTTCCGTCAACAGCTCCAATGCTTGGAGGAAAGTGCAGAATCATTACGCCTTAGAAGCTGCAAGTTCTACAAAGGATGTCGAAAGTATACGGAAGGGCTTGGAGAGGCATATGATGGAGACATCGCATTTATAAGTTCCCTTGAAAGTTTTGGAGGAGGGCATAATGATCCTCATTTCGTTGCTTTGGGAGGACCTGTAATGAACAAATTTACCATTGCTTTGAGAGAAATCACTACATACAAGGAACTTCTTAGGTCACAGGTAGAGCACATGATTGATGACCGGTTACTACAAATTGTCAATATTGACATCAATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTTCCCTTATATATGACCAGGCACGTGAAAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGATATTGCCACCGTCGTAGAAGAGGAATTGAAGGATGCAAGAACGTCGTTTGAGGAAGCCCGTTTCAGTCTGGTTGGTTCTCTTAATAACATTGAGGTCAAGAAGAGATTTGAGTTTTTAGAGGTTGTCACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTACTACAGGAGATGGAACCTTTCATTAGCGAGGTTTTGGATTATGTACAACAATCAAAAGAAAATTTCGATAAGGACCAGATTTTACTTTATAAAAGAATGCAGGAATACAAGAAACAGGTTTATCAAGAAAGTAGGCTGTCCTTGAATGGCCCGGATGGTTCTCCTACTGGAGACTCTGTACATCCCTTTTCTAGGATATCACCTGAAGTAGGAGATGTAATAAAGGAATCTGCCGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAGCGGTCTTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGCCGAGGAATGTTGTATTACTATCGCAAACCATGGAGTGTGTCATATGGCAATGATCAACCATCTCCAAGAAAGAATAATGCCAATGAAAATGGTTCTGGGTTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAAATCTGTAGCACGTCATACAGTAAATCTGCTGACGTCAACTATAAAGGTTGATGCTGATCAGTTGGATTTAAGATTTTGCTTCAGAATAATTTCGCCATCAAAGAGCTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGAGTGGATGGAAAAAATAAATGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACCCTAGGATCACCATCAGATGACTCAGAAACCGGTGACTCTTACTCAGCCGACAAGAATGATATGTTAGAAAGTTCTCCAGATGATGATCGCTGTGAGATTGCAAAGTCTGGATCCAAGAATTCCACCCCCAGTAACCACTTACGTTTATCTAAAAGTATGCAGTTGCAAAAACGCAGTATAAAAAATGAAAAACCTATTGATGTTCTTAGAAAGGTGAGTGGGAATGACAAATGTGCTGATTGCGGTAAGCCTGAACCAGACTGGGCATCTCTAAATCTCGGCATCCTTATATGCATTGAATGCTCTGGTGTTCATCGTAATCTTGGGGTGCATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGACCACTCTGTCTTAAGTATGTTTGAGTCCCTGGGCAATGATTTTGCAAACTCAGTTTGGGAGGAGCTGTTATGTTCAAGGAGTACTTTGCAAGATGTTGACACCCATGTTGGTTCATCCAAGGAAAATAGAGACAGCGTATTTCATGCAAGAAAACCAAAACACGATGATTCTAATCAATTAAAGGAAAAGTTCATTCACGCAAAGTATGCTGAGAAAATATTTATTTGCCGGAAAGAGAAAACCCCTGCACAACAAATGTTGGAAAGCATCTGTGCTAATGACAAGAAGGCAGTGTACCAGCACATTGTCAAGTCAGAAATGGATGTCAATGCCATCAGTAAGCAAGCACTTTCTGGTAACTCTTCCAACATTGCTTCTTTGATTAATTTCAACAAATCATCTGAAAGTGAGAATCAGTTGATTGTGGACATACAAGATGGTTCTAGTGTACTTCACCTGGCTTGCTTAACAAGTGACGCTGGCATGGTGGATCTTCTCCTACAGCATGGGGCAGATGTAAATGCTTGTGATTCAAGAGGTCGGACACCACTACATTACTGTATTACAAGAGGGAAGCCCGCAGCTGCTAAAGTACTTCTACTGAGGGGGGCCAATCCACATGTAGCTGATAAAGAAGATAACACTCCTCTTAAGCTTGCAATTGAATCCAGCTGTGTTGGCAATGAAATTCTCACTCTCTTGTCAAGCAGATGA 2397 0.408 MHFTNLDDTPMFRQQLQCLEESAESLRLRSCKFYKGCRKYTEGLGEAYDGDIAFISSLESFGGGHNDPHFVALGGPVMNKFTIALREITTYKELLRSQVEHMIDDRLLQIVNIDINEVKEARKRFDKASLIYDQAREKFMSLRKSTKIDIATVVEEELKDARTSFEEARFSLVGSLNNIEVKKRFEFLEVVTGIMDAHLRYFQQGYQLLQEMEPFISEVLDYVQQSKENFDKDQILLYKRMQEYKKQVYQESRLSLNGPDGSPTGDSVHPFSRISPEVGDVIKESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWSVSYGNDQPSPRKNNANENGSGFLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKVDADQLDLRFCFRIISPSKSYTLQAENAVDQMEWMEKINGVIASLLSVQTLGSPSDDSETGDSYSADKNDMLESSPDDDRCEIAKSGSKNSTPSNHLRLSKSMQLQKRSIKNEKPIDVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDHSVLSMFESLGNDFANSVWEELLCSRSTLQDVDTHVGSSKENRDSVFHARKPKHDDSNQLKEKFIHAKYAEKIFICRKEKTPAQQMLESICANDKKAVYQHIVKSEMDVNAISKQALSGNSSNIASLINFNKSSESENQLIVDIQDGSSVLHLACLTSDAGMVDLLLQHGADVNACDSRGRTPLHYCITRGKPAAAKVLLLRGANPHVADKEDNTPLKLAIESSCVGNEILTLLSSR 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05322 798 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515
Trre7g05322 798 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Trre7g05322 798 Gene3D - 285 438 IPR011993 -
Trre7g05322 798 ProSiteProfiles Ankyrin repeat region circular profile. 740 772 - -
Trre7g05322 798 CDD BAR_SFC_plant 15 215 IPR035670 -
Trre7g05322 798 PANTHER CENTAURIN/ARF 4 796 IPR045258 GO:0005096
Trre7g05322 798 Pfam PH domain 294 427 IPR001849 -
Trre7g05322 798 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 480 646 - -
Trre7g05322 798 MobiDBLite consensus disorder prediction 446 470 - -
Trre7g05322 798 ProSiteProfiles Ankyrin repeat profile. 707 739 IPR002110 GO:0005515
Trre7g05322 798 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Trre7g05322 798 SMART PH_update 293 430 IPR001849 -
Trre7g05322 798 Pfam Putative GTPase activating protein for Arf 501 636 IPR001164 GO:0005096
Trre7g05322 798 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Trre7g05322 798 SUPERFAMILY PH domain-like 203 428 - -
Trre7g05322 798 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Trre7g05322 798 MobiDBLite consensus disorder prediction 437 483 - -
Trre7g05322 798 Pfam Ankyrin repeats (many copies) 709 761 IPR002110 GO:0005515
Trre7g05322 798 Gene3D - 665 796 IPR036770 -
Trre7g05322 798 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Trre7g05322 798 ProSiteProfiles ARF GTPase-activating proteins domain profile. 498 643 IPR001164 GO:0005096
Trre7g05322 798 ProSiteProfiles Ankyrin repeat region circular profile. 707 738 - -
Trre7g05322 798 SMART ANK_2a 707 736 IPR002110 GO:0005515
Trre7g05322 798 SMART ANK_2a 740 769 IPR002110 GO:0005515
Trre7g05322 798 SMART arf_gap_3 498 644 IPR001164 GO:0005096
Trre7g05322 798 PRINTS HIV Rev interacting protein signature 510 529 IPR001164 GO:0005096
Trre7g05322 798 PRINTS HIV Rev interacting protein signature 529 546 IPR001164 GO:0005096
Trre7g05322 798 PRINTS HIV Rev interacting protein signature 552 573 IPR001164 GO:0005096
Trre7g05322 798 SUPERFAMILY Ankyrin repeat 651 786 IPR036770 -
Trre7g05322 798 CDD PH_ACAP 295 432 - -
Trre7g05322 798 CDD ArfGap 501 630 - -
Trre7g05322 798 Gene3D Arf GTPase activating protein 479 644 IPR038508 -
Trre7g05322 798 Coils Coil 118 138 - -
Trre7g05322 798 SUPERFAMILY ArfGap/RecO-like zinc finger 497 637 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05322 Trre-Chr7 59421653 59432253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05322 490 636 C2H2 Transcription Factor Family AT3G07940 38.095 7.16e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05322 K12489 - gmx:100792517 1224.92