Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05317 ATGCCTTTTGAAGTCATGGATCAGAGGGGTGTTTCTGACATTTTTGATGATATTTCCTTTCATTCTGAGAGGAATGTTGGATTAAGGAAGCCAAAATATACGAATGTCCAACACCGCCAAGGAATGAATGGAATGGTAGCACCGCCTGGTAGCACTTTGAATACTTCATCGCCCTTTGAAGTAAATGGAAAATCTGGATTTCCGATGTCGCAAACTAATCTATCTGAGGAAAGTGTAGAAAAGCTACCTTTTGGCGTTGAACAAGGGATTGCTGGTGTATTGAAAGGTTCCAATGAATCCTTGCGTTATAATCCCCAAGCATGGTCTGACGTGTTTAGGCAGTCAGCACCTACCTCGTATCGTCTAGTTGGGAATAAGCTTGTCGCGGTCGATGCCGTTCCCCGCGAAAGTAGTCTATTCTCGAGCTCACTTTCTGATATGTTTAGCCAGAAATTGAATCTATTGGCGAATGATCTTCTGTCCAATCAGCAGACTGCTGCCGGTTCCCTTCTGGGGGAAGATCCGTATAAATCTCTTGAAGAGATGGAGGCTGACTATATACATAATCTCCTTCCTGATGAAGATGACCTATTTTCTGGTGTTGCTGATGAGTTAGAACACAATTCTTATGCTAGGATTAAAGATGACTCGGAAGATTTGGATTTGTTTAGTAGCGGCGGAGGCATGGAGCTGGAAGGAGATGAACGTTTAAGTTCGCTGAAAAGAACAAGTGGTTTGGATGGAGATCACAGTTTCTTTGGAGTTTCTAAAGGAAAATTTCCTTTTGTTGAACAACCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAGCGTTGAAGACTTTGAGCTAAACTCTCTATTTGAGCAATATGGCGATATCCGAACCATGTATACAGCTTGCAAGCATCGTGGGTTTGTGATGATTTCTTATTTTGATATAAGGGCAGCACAGAAAGCCATGCAAACACTACAAAGTAGGCCATTGAGGTCTAGGAAACTAGACATACATTATTCGATTCCAAAGGTCAATGCTCCAGAGAAGGATATCGGTCATGGTACGCTGATGTTGTCTGGTCTTGATTCATCGGTTTTAAATGATGAGCTTATACATTATTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCCGGAATGAAGCACCTCAAATTTGTAGAGTTTTATGACGTTCGAGCTGCAGAAGCTGCACTTCGGGCTTTGAACAGGGTTGAAATTTCTGGAAAACAGATTAAGCTTGAACCTGGCCATCCTAGGTTCGGGAGATGTCTGATGCAGCAGTCTTATAAGGTGCAAGATGAAAGAGATCTTGGTCGTAGCATTATTGACAACTTACAATTGAGACAAAAGCCAACAGTGACTTCTGGAGCAATTGATTCTGCCGGCATGGAAAATGGATATAGCCAGAGATTTCAATCTGCAATGCAGCAACAACCTTTGAATGGATTTATTGACAATTCATTCTATCATGTCAATTCTAGCGTCAACAACGCTGCGAGAGGGGCATCTACTGGAAAAGTTTCTGGTGTTTCTGAGTCCAGTCATCTTGTCGATGCGATGAAGTTTGCATCTAGTCCAACAACATTTCACCCTCATTCTTTACCAGAGTATCATGGAAGTTTAGCTAATGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACAAGGCTGGTAATATAGGCGCTGGAGTGACAGAAGCCGCTAATGGCAGGCATATTCATGGAATAAGCTCAACTGGGAACTTAGCAGAATTCAATGGAGGAGGGTCATCCGGAAACGAGATCCGCGCACATCATGGACTTAATCATATATGGAGTGGCTCCAACTTGCATCAGCAATCGCCATCAAGTAACATGCTTTGGCAGAAAACGCCATCGTCATCATTTGGTAATGGTTCTCCAGGCCTACCTCAAATGTCAAGCTTTGCTAGAACACCTCCTCATATGCTGAGAACACAACATTTGGATCATCATGTTGGATCAGCGCCGGTTGTTACAGCCTCTCCGTGGGAAAGGAAAAACTCTTATTTGGGAGAGTCTCCTGAGGTGTCTGGTTTTCACGTGAGTTCTCCTGGAAACGGAGGTTTTCATGGTTCTTGGCAAATGCGTCCAATGGACTTTTCTCCTCATAACAACATGTTTTCTCATGTTGGTGGGAATGGTACTGAACTCTCATCCAGTGCTGGGCAGGGCTCGCCTAATCCGTTGTCACATATTCTCTATGGTAGACAACCTACGACTACAGTGTCGAAATTTGATCCTACCAATGAGCGAATGAAAAACGGTAACGGTTATAGTCGTAAGAGTGAAGCTAACACCATGAGTAGTGCTGACAGAAAACAATATGAACTTGACCTGGGCCGCATAATGCGTGGAGAAGACACTAGAACAACACTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGAAATGTCGGGGAACTTATGATTTTCTGTATTTACCAATTGATTTTAAGAATAAATGTAATGTTGGATATGCATTCATAAATATGACTGATCCTGCTCAAATTATTCCTTTGCACCAGGCTTTCCATGGTAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTTGCATCACTTGCATATGCTCGAATCCAAGGAAGAACCTCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCAGACAGAAGGCCCAAATGCTGGCGATATGGAGCCTTTCCCCATTGGAGCCAATGTTAGAGTGAGACCTGGAAAATCTCGCAATGCTGGCAACGAGGAGAATCGCAACCAAGCTCCAACTTCAACTTTAACAAACGGAGAAGAGTCGTCGTCTGCAAATGGAAACTCCGACTGA 2922 0.4227 MPFEVMDQRGVSDIFDDISFHSERNVGLRKPKYTNVQHRQGMNGMVAPPGSTLNTSSPFEVNGKSGFPMSQTNLSEESVEKLPFGVEQGIAGVLKGSNESLRYNPQAWSDVFRQSAPTSYRLVGNKLVAVDAVPRESSLFSSSLSDMFSQKLNLLANDLLSNQQTAAGSLLGEDPYKSLEEMEADYIHNLLPDEDDLFSGVADELEHNSYARIKDDSEDLDLFSSGGGMELEGDERLSSLKRTSGLDGDHSFFGVSKGKFPFVEQPSRTLFVRNINSSVEDFELNSLFEQYGDIRTMYTACKHRGFVMISYFDIRAAQKAMQTLQSRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELIHYFGFYGEIKEIYEYPGMKHLKFVEFYDVRAAEAALRALNRVEISGKQIKLEPGHPRFGRCLMQQSYKVQDERDLGRSIIDNLQLRQKPTVTSGAIDSAGMENGYSQRFQSAMQQQPLNGFIDNSFYHVNSSVNNAARGASTGKVSGVSESSHLVDAMKFASSPTTFHPHSLPEYHGSLANGSPYNFSSTISNKAGNIGAGVTEAANGRHIHGISSTGNLAEFNGGGSSGNEIRAHHGLNHIWSGSNLHQQSPSSNMLWQKTPSSSFGNGSPGLPQMSSFARTPPHMLRTQHLDHHVGSAPVVTASPWERKNSYLGESPEVSGFHVSSPGNGGFHGSWQMRPMDFSPHNNMFSHVGGNGTELSSSAGQGSPNPLSHILYGRQPTTTVSKFDPTNERMKNGNGYSRKSEANTMSSADRKQYELDLGRIMRGEDTRTTLMIKNIPNKYTSKMLLVAIDEKCRGTYDFLYLPIDFKNKCNVGYAFINMTDPAQIIPLHQAFHGKKWEKFNSEKVASLAYARIQGRTSLIAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKSRNAGNEENRNQAPTSTLTNGEESSSANGNSD 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05317 973 FunFam Protein MEI2-like 1 352 446 - -
Trre7g05317 973 MobiDBLite consensus disorder prediction 919 973 - -
Trre7g05317 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 420 IPR000504 GO:0003723
Trre7g05317 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 334 IPR000504 GO:0003723
Trre7g05317 973 SUPERFAMILY RNA-binding domain, RBD 806 890 IPR035979 GO:0003676
Trre7g05317 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 341 IPR000504 GO:0003723
Trre7g05317 973 CDD RRM3_MEI2_like 807 892 IPR034454 -
Trre7g05317 973 Gene3D - 352 446 IPR012677 -
Trre7g05317 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 426 IPR000504 GO:0003723
Trre7g05317 973 SMART rrm1_1 806 882 IPR000504 GO:0003723
Trre7g05317 973 SMART rrm1_1 269 337 IPR000504 GO:0003723
Trre7g05317 973 SMART rrm1_1 354 422 IPR000504 GO:0003723
Trre7g05317 973 MobiDBLite consensus disorder prediction 946 973 - -
Trre7g05317 973 MobiDBLite consensus disorder prediction 754 785 - -
Trre7g05317 973 CDD RRM1_MEI2_like 267 342 IPR034453 -
Trre7g05317 973 SUPERFAMILY RNA-binding domain, RBD 265 425 IPR035979 GO:0003676
Trre7g05317 973 Gene3D - 262 351 IPR012677 -
Trre7g05317 973 Pfam RNA recognition motif 2 804 900 IPR007201 -
Trre7g05317 973 PANTHER RNA RECOGNITION MOTIF-CONTAINING 116 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05317 Trre-Chr7 59374270 59379762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05317 266 419 Eukaryotic Initiation Factors Gene Family AT1G71770 27.607 1.04e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05317 - - gmx:100797893 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05317 7 59374270 59379762 Trre5g04750 5 49338488 49344041 PCT