Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05288 ATGAAGCGGACGATTGTCTCAGTTTCTTCATTAGGAACCTCATCATCAGCTTCCTGTTCTATACAGCGAAAAGAGAACAAGCGGCGAAAACTTCAACGAACTTCATCTTCCGGTTGGCTGTCTTCGTGTTCTCCTACCATGAATCAGGATGAGTTTTCGAAGTCTGTGGAACAAGTAGGATGGACTCCTATGCAGGACAAAATGCTGTTAGAACTGACAGTAGACGCTGTTCGACGAGCAGGAATATTCTCGAGTTGGGAGAATGCGAAGCCAATAGAGAGGAGTCTTAAAGTCTTGCGCAAACTATATGGACCTGAATCCGATGTGTGGAGTGCCGGCGTTATTTTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCAGAAACTGAACCGGGGATCTTCCGACAGATTTTAATAGGAAAAATTGATTTTCAGTCTGAGCCTTGGCCTAGCATTTCAGACAGCGCAAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAGAACAAGGCTAACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAACATTGCACCTGATAAACCTATTGACTCGGCAGTTTTATCACGTCTGAAGCAATTCTCTGCAATGAATAAACTGAAAAAGATGGCTTTGCGTGTTATTGCTGAGCGGCTATCTGAGGAAGAAATTGGCGGCCTGAAAGAGTTATTCAAGATGATTGACACCGACAGCAGTGGAACCATAACATTTGATGAGTTAAAAGATGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCCAGGATCTTATGGATGCTGCGGATGTTGATAAAAGCAGGACAATCGACTACGGTGAATTCATTGCTGCAACTGTTCATTTAAATAAGCTGGAGAGAGAAGAAAACCTGTTGTCAGCCTTCGCCTATTTTGACAAAGATGCTAGTGGTTACATAACGATTGATGAGATTCAACAAGCTTGTAAAGACTTTGGTTTAGAAGATATCCACATTGATGAAATAATCAAGGAAATTGATCAAGACAATGATGGACAAATAGATTATGGAGAATTTGCTGCAATGATGAGAAAGGGAAATGGAGGAATAGGAAGAAGAACAATGAGAAACACACTAAATTTAAGAGATGCTTTGGGATTAGTAGACAATGGATCCAATCAAGTTATTGATGGTTATCTTAACTAA 1203 0.4106 MKRTIVSVSSLGTSSSASCSIQRKENKRRKLQRTSSSGWLSSCSPTMNQDEFSKSVEQVGWTPMQDKMLLELTVDAVRRAGIFSSWENAKPIERSLKVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILIGKIDFQSEPWPSISDSAKDLIRKMLDQNPRTRLTAHEVLRHPWIVDDNIAPDKPIDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGTITFDELKDGLKRVGSELMESEIQDLMDAADVDKSRTIDYGEFIAATVHLNKLEREENLLSAFAYFDKDASGYITIDEIQQACKDFGLEDIHIDEIIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRNTLNLRDALGLVDNGSNQVIDGYLN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05288 400 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Trre7g05288 400 ProSiteProfiles EF-hand calcium-binding domain profile. 299 334 IPR002048 GO:0005509
Trre7g05288 400 ProSitePatterns EF-hand calcium-binding domain. 276 288 IPR018247 -
Trre7g05288 400 MobiDBLite consensus disorder prediction 33 47 - -
Trre7g05288 400 PANTHER SERINE/THREONINE-PROTEIN KINASE 98 358 - -
Trre7g05288 400 SMART efh_1 267 295 IPR002048 GO:0005509
Trre7g05288 400 SMART efh_1 303 331 IPR002048 GO:0005509
Trre7g05288 400 SMART efh_1 231 259 IPR002048 GO:0005509
Trre7g05288 400 SMART efh_1 337 365 IPR002048 GO:0005509
Trre7g05288 400 ProSiteProfiles EF-hand calcium-binding domain profile. 263 298 IPR002048 GO:0005509
Trre7g05288 400 MobiDBLite consensus disorder prediction 19 47 - -
Trre7g05288 400 ProSitePatterns EF-hand calcium-binding domain. 240 252 IPR018247 -
Trre7g05288 400 ProSiteProfiles EF-hand calcium-binding domain profile. 337 368 IPR002048 GO:0005509
Trre7g05288 400 FunFam Calcium-dependent protein kinase SK5 95 189 - -
Trre7g05288 400 ProSiteProfiles Protein kinase domain profile. 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05288 400 SMART serkin_6 3 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05288 400 Pfam Protein kinase domain 101 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05288 400 CDD EFh 304 363 IPR002048 GO:0005509
Trre7g05288 400 CDD EFh 232 291 IPR002048 GO:0005509
Trre7g05288 400 ProSitePatterns EF-hand calcium-binding domain. 312 324 IPR018247 -
Trre7g05288 400 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
Trre7g05288 400 FunFam calcium-dependent protein kinase SK5 221 293 - -
Trre7g05288 400 SUPERFAMILY Protein kinase-like (PK-like) 99 207 IPR011009 -
Trre7g05288 400 SUPERFAMILY EF-hand 223 364 IPR011992 -
Trre7g05288 400 ProSiteProfiles EF-hand calcium-binding domain profile. 227 262 IPR002048 GO:0005509
Trre7g05288 400 Gene3D Transferase(Phosphotransferase) domain 1 83 184 - -
Trre7g05288 400 Gene3D - 297 400 - -
Trre7g05288 400 Gene3D - 185 293 - -
Trre7g05288 400 FunFam Calcium-dependent protein kinase SK5 297 392 - -
Trre7g05288 400 Pfam EF-hand domain pair 232 292 IPR002048 GO:0005509
Trre7g05288 400 Pfam EF-hand domain pair 302 363 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05288 Trre-Chr7 59195179 59199375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05288 91 392 EF-hand Containing Proteins AT4G09570 74.098 1.90e-163 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre7g05288 Pkinase 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05288 K13412 - gmx:547825 561.992